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Moc01g10250 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g10250
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:6365824..6375865
RNA-Seq ExpressionMoc01g10250
SyntenyMoc01g10250
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137317.1 uncharacterized protein LOC111008813 [Momordica charantia]3.5e-6492.91Show/hide
Query:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD
        TSSAEKKEERKRSRTPPRRTDRP VINTIFGGPSGGQSG KRKELA AARREVCIIREQRPTC ITFDGA LEEVHL HNDALVIAPLIDHVVV RVLVD
Subjt:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD

Query:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
         G SANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIP+
Subjt:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

XP_022148126.1 uncharacterized protein LOC111016881 [Momordica charantia]3.9e-6390.78Show/hide
Query:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD
        TSSAEKK+ERKRSRTPPRRT+RP VINTIFGGPSGG+SG+KRKELA AARREVCIIREQRPTC ITFDGA LE VHL HNDALVIAPLIDHVVVRRVLVD
Subjt:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD

Query:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
         GASANILSLPTYLALGWTRSQLK+SPTPLVGFSGESVIP+
Subjt:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

XP_022150862.1 uncharacterized protein LOC111018909 [Momordica charantia]1.0e-6344.74Show/hide
Query:  PPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD---------------
        PPRR DR  VINTIFGGPSGGQSG KRK+LA  ARREVC IREQ+PTC ITF    L+ VHL HNDALVIAPLIDH++VRRVLVD               
Subjt:  PPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD---------------

Query:  --------------------------------------------RGASANILSL----------------------------------------------
                                                    RG  A IL L                                              
Subjt:  --------------------------------------------RGASANILSL----------------------------------------------

Query:  ----------PTYLA--------LGWTRSQLKK------SPTPLVGFSGESVIPDV-SAYETDLATSVPVEILDNPSISEPDLMKIDAPEPSWMDPIVDF
                    Y A        L   RS L +      S  P    S   V+  + SAYETDLA SVPV ILD PSI EPD+MK+D   P+WMDPIV+F
Subjt:  ----------PTYLA--------LGWTRSQLKK------SPTPLVGFSGESVIPDV-SAYETDLATSVPVEILDNPSISEPDLMKIDAPEPSWMDPIVDF

Query:  IRGNSPQDPKERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCGNHSGARSLSAK
        I+GN PQ+  E++K+ RRAARF  R G LYRRGFSLPLL+C+TPEEG Y+LREIHEGV GNHS ARSLSAK
Subjt:  IRGNSPQDPKERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCGNHSGARSLSAK

XP_022152110.1 uncharacterized protein LOC111019899 [Momordica charantia]1.0e-6391.49Show/hide
Query:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD
        TSSAEKKEERKRSRTPPRRTDRP VINTIFGGPSGGQSG+KRK+LA AARREVCIIREQRPTC ITFD A L EVHL HNDALVIAPLIDHVVVRRVLVD
Subjt:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD

Query:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
         GASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESV+P+
Subjt:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

XP_022157676.1 uncharacterized protein LOC111024332 [Momordica charantia]2.1e-6485.16Show/hide
Query:  DKWQGRTPSFCRGVTSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIA
        +K +G      +  TSSAEKKEERKRSRTPPRRTDRP VINTIFGGPSGGQSG+KRKELA  ARREVCIIREQ PTC ITFDGA LEEVHL HNDALVIA
Subjt:  DKWQGRTPSFCRGVTSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIA

Query:  PLIDHVVVRRVLVDRGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
        PLIDHVVVRRVLVD GASANILSLPTYLALGWTRSQLK+SPTPLVGFSGESVIP+
Subjt:  PLIDHVVVRRVLVDRGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

TrEMBL top hitse value%identityAlignment
A0A6J1C7X5 uncharacterized protein LOC1110088131.7e-6492.91Show/hide
Query:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD
        TSSAEKKEERKRSRTPPRRTDRP VINTIFGGPSGGQSG KRKELA AARREVCIIREQRPTC ITFDGA LEEVHL HNDALVIAPLIDHVVV RVLVD
Subjt:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD

Query:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
         G SANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIP+
Subjt:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

A0A6J1D4F7 uncharacterized protein LOC1110168811.9e-6390.78Show/hide
Query:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD
        TSSAEKK+ERKRSRTPPRRT+RP VINTIFGGPSGG+SG+KRKELA AARREVCIIREQRPTC ITFDGA LE VHL HNDALVIAPLIDHVVVRRVLVD
Subjt:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD

Query:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
         GASANILSLPTYLALGWTRSQLK+SPTPLVGFSGESVIP+
Subjt:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

A0A6J1DBX4 Ribonuclease H5.0e-6444.74Show/hide
Query:  PPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD---------------
        PPRR DR  VINTIFGGPSGGQSG KRK+LA  ARREVC IREQ+PTC ITF    L+ VHL HNDALVIAPLIDH++VRRVLVD               
Subjt:  PPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD---------------

Query:  --------------------------------------------RGASANILSL----------------------------------------------
                                                    RG  A IL L                                              
Subjt:  --------------------------------------------RGASANILSL----------------------------------------------

Query:  ----------PTYLA--------LGWTRSQLKK------SPTPLVGFSGESVIPDV-SAYETDLATSVPVEILDNPSISEPDLMKIDAPEPSWMDPIVDF
                    Y A        L   RS L +      S  P    S   V+  + SAYETDLA SVPV ILD PSI EPD+MK+D   P+WMDPIV+F
Subjt:  ----------PTYLA--------LGWTRSQLKK------SPTPLVGFSGESVIPDV-SAYETDLATSVPVEILDNPSISEPDLMKIDAPEPSWMDPIVDF

Query:  IRGNSPQDPKERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCGNHSGARSLSAK
        I+GN PQ+  E++K+ RRAARF  R G LYRRGFSLPLL+C+TPEEG Y+LREIHEGV GNHS ARSLSAK
Subjt:  IRGNSPQDPKERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCGNHSGARSLSAK

A0A6J1DD03 uncharacterized protein LOC1110198995.0e-6491.49Show/hide
Query:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD
        TSSAEKKEERKRSRTPPRRTDRP VINTIFGGPSGGQSG+KRK+LA AARREVCIIREQRPTC ITFD A L EVHL HNDALVIAPLIDHVVVRRVLVD
Subjt:  TSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVD

Query:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
         GASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESV+P+
Subjt:  RGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

A0A6J1DYW5 uncharacterized protein LOC1110243321.0e-6485.16Show/hide
Query:  DKWQGRTPSFCRGVTSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIA
        +K +G      +  TSSAEKKEERKRSRTPPRRTDRP VINTIFGGPSGGQSG+KRKELA  ARREVCIIREQ PTC ITFDGA LEEVHL HNDALVIA
Subjt:  DKWQGRTPSFCRGVTSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPTCRITFDGAHLEEVHLAHNDALVIA

Query:  PLIDHVVVRRVLVDRGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD
        PLIDHVVVRRVLVD GASANILSLPTYLALGWTRSQLK+SPTPLVGFSGESVIP+
Subjt:  PLIDHVVVRRVLVDRGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGGGCCGATACGATTCGAAGAGTTGGACTTGGACGACTAACAAAGCGTGATGGGTTAGAAGCCACAGTTCAAGGCCTTTGGGATAAATGGCAAGGTCGA
ACGCCAAGCTTCTGTAGAGGAGTGACCAGCTCGGCAGAGAAAAAGGAAGAGCGGAAGCGTTCGAGGACGCCGCCCCGGCGCACTGACCGACCTGAGGTCATCAAT
ACCATTTTCGGAGGGCCAAGCGGGGGTCAGTCCGGATATAAAAGAAAGGAGTTAGCTCATGCAGCCAGGCGCGAAGTGTGCATCATCAGGGAGCAGAGGCCGACC
TGCCGAATCACCTTCGACGGTGCACACTTGGAGGAGGTCCACCTGGCCCACAATGATGCACTTGTGATCGCTCCCTTGATTGATCATGTGGTGGTCAGGAGGGTG
CTGGTAGACAGAGGCGCATCTGCTAACATCCTGTCCTTACCAACCTACCTCGCCCTGGGATGGACGAGGTCGCAATTGAAGAAAAGCCCGACACCGCTGGTTGGG
TTCTCTGGAGAATCGGTCATCCCAGACGTATCAGCGTACGAGACCGACCTGGCCACGTCTGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTCGGAGCCAGAT
CTGATGAAGATCGACGCTCCAGAGCCCTCATGGATGGACCCAATAGTGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGG
CGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTATACGTCCTCAGA
GAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTTTCAGCCAAAGTGATCCGACAAGGATACTATTGGTCGACCCTCAGCCAGGACGCCAAG
AAGCGCCTGGCGCCTGCCATGTTTTTCCAGCATTTCGAAAACTCTCAGGTTCGAGAAGTCGTGCAACATATCTACAACTTAAGGGCTTCATTGGATTTTGCGGTT
TTACCTTCATGGCCTCCAGCGCTAGCTGCTATCCTTGGTCATCCATCTCCTAGCACTGACACTGATCCTAATCCACAACCTCCGACTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGGGCCGATACGATTCGAAGAGTTGGACTTGGACGACTAACAAAGCGTGATGGGTTAGAAGCCACAGTTCAAGGCCTTTGGGATAAATGGCAAGGTCGA
ACGCCAAGCTTCTGTAGAGGAGTGACCAGCTCGGCAGAGAAAAAGGAAGAGCGGAAGCGTTCGAGGACGCCGCCCCGGCGCACTGACCGACCTGAGGTCATCAAT
ACCATTTTCGGAGGGCCAAGCGGGGGTCAGTCCGGATATAAAAGAAAGGAGTTAGCTCATGCAGCCAGGCGCGAAGTGTGCATCATCAGGGAGCAGAGGCCGACC
TGCCGAATCACCTTCGACGGTGCACACTTGGAGGAGGTCCACCTGGCCCACAATGATGCACTTGTGATCGCTCCCTTGATTGATCATGTGGTGGTCAGGAGGGTG
CTGGTAGACAGAGGCGCATCTGCTAACATCCTGTCCTTACCAACCTACCTCGCCCTGGGATGGACGAGGTCGCAATTGAAGAAAAGCCCGACACCGCTGGTTGGG
TTCTCTGGAGAATCGGTCATCCCAGACGTATCAGCGTACGAGACCGACCTGGCCACGTCTGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTCGGAGCCAGAT
CTGATGAAGATCGACGCTCCAGAGCCCTCATGGATGGACCCAATAGTGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGG
CGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTATACGTCCTCAGA
GAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTTTCAGCCAAAGTGATCCGACAAGGATACTATTGGTCGACCCTCAGCCAGGACGCCAAG
AAGCGCCTGGCGCCTGCCATGTTTTTCCAGCATTTCGAAAACTCTCAGGTTCGAGAAGTCGTGCAACATATCTACAACTTAAGGGCTTCATTGGATTTTGCGGTT
TTACCTTCATGGCCTCCAGCGCTAGCTGCTATCCTTGGTCATCCATCTCCTAGCACTGACACTGATCCTAATCCACAACCTCCGACTTCATGA
Protein sequenceShow/hide protein sequence
MTRADTIRRVGLGRLTKRDGLEATVQGLWDKWQGRTPSFCRGVTSSAEKKEERKRSRTPPRRTDRPEVINTIFGGPSGGQSGYKRKELAHAARREVCIIREQRPT
CRITFDGAHLEEVHLAHNDALVIAPLIDHVVVRRVLVDRGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGESVIPDVSAYETDLATSVPVEILDNPSISEPD
LMKIDAPEPSWMDPIVDFIRGNSPQDPKERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCGNHSGARSLSAKVIRQGYYWSTLSQDAK
KRLAPAMFFQHFENSQVREVVQHIYNLRASLDFAVLPSWPPALAAILGHPSPSTDTDPNPQPPTS