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Moc01g10570 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g10570
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:6527478..6529694
RNA-Seq ExpressionMoc01g10570
SyntenyMoc01g10570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]3.1e-2438.22Show/hide
Query:  MKYPTPKGVGNIRGEQMASRECYDAALKGSNTCTAIMNQ---EELVKSDTDLTRC------TPVEQLELLSLLSPKKQAS----RSVIDCVEGMRF----
        +KY TP GVG +RGEQ  SRECY +ALKG + C A+  Q   ++ ++S  DL +          E+LEL+ LLSP++Q S        D  E + F    
Subjt:  MKYPTPKGVGNIRGEQMASRECYDAALKGSNTCTAIMNQ---EELVKSDTDLTRC------TPVEQLELLSLLSPKKQAS----RSVIDCVEGMRF----

Query:  --------------------EY--------------ALHF---------------NFQASNSEVE-----YKSLLADLQ-----MVLRSENTNADALVKL
                            EY              A+H                 +QA +S +E      +S LA L+      V RSEN+NADAL KL
Subjt:  --------------------EY--------------ALHF---------------NFQASNSEVE-----YKSLLADLQ-----MVLRSENTNADALVKL

Query:  ASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL
        ASAYE DLARSVPVEIL+ PSILE DLM+V+T  PS MD I+EF+ G + ++  E +K+
Subjt:  ASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL

XP_022150037.1 uncharacterized protein LOC111018309 [Momordica charantia]7.9e-2042.94Show/hide
Query:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA
        G RFEYAL FNF+ SN+EVEY++LLA                 D Q+V+                                     RSEN+NADAL KLA
Subjt:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA

Query:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKLGHSCS
        SAYEIDLARSVPVEIL+ PSILE D+M+V+T  PS MDPI EF+ G    +  E +K+    +
Subjt:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKLGHSCS

XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]2.7e-2043.67Show/hide
Query:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA
        G RFEYAL FNF+ SN+E EY++LLA                 D Q+V+                                     RSEN+NADAL KLA
Subjt:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA

Query:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL
        SAYE DLARSVPVEIL+ PSILE D+M+V+T  PS MDPI+EF+ G  L++  E +K+
Subjt:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL

XP_022152853.1 uncharacterized protein LOC111020478 [Momordica charantia]4.2e-2146.46Show/hide
Query:  GMRFEYALHFNFQASNSEVEYKSLLADLQM------------------VLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSL
        G RFEYA+ FNF+ SN+E EY++LLA L++                  V R EN+NADAL K+ASAYE DLA+SVPV+IL+ PSIL+ D+M+++T  PS 
Subjt:  GMRFEYALHFNFQASNSEVEYKSLLADLQM------------------VLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSL

Query:  MDPIIEFLNGKVLKNRDEAQKLGHSCS
        MDPI+EF+ G   +   E +++    +
Subjt:  MDPIIEFLNGKVLKNRDEAQKLGHSCS

XP_022158219.1 protein NYNRIN-like [Momordica charantia]3.2e-2945.23Show/hide
Query:  MMKYPTPKGVGNIRGEQMASRECYDAALKGSNTCT--AIMNQEELVKSDTDLTR---CTPVEQLELLSLLSPKKQASRSVIDCVEGMRFEYALHFNFQAS
        ++KY TP GVG +RGEQ ASRECY +ALKGS+ C   A  +  E ++   DL R     P E+LEL+ LLS +KQ        V  ++ EY      QA 
Subjt:  MMKYPTPKGVGNIRGEQMASRECYDAALKGSNTCT--AIMNQEELVKSDTDLTR---CTPVEQLELLSLLSPKKQASRSVIDCVEGMRFEYALHFNFQAS

Query:  NSEVE-----YKSLLA-----DLQMVLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL
        ++ +E      +S LA     ++  + R+EN+NADAL KLASAYE DLARSVPVEIL+ PSI E DLM++     S MDPI +F+ G   ++  E +KL
Subjt:  NSEVE-----YKSLLA-----DLQMVLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL

TrEMBL top hitse value%identityAlignment
A0A6J1D6M1 Ribonuclease H1.5e-2438.22Show/hide
Query:  MKYPTPKGVGNIRGEQMASRECYDAALKGSNTCTAIMNQ---EELVKSDTDLTRC------TPVEQLELLSLLSPKKQAS----RSVIDCVEGMRF----
        +KY TP GVG +RGEQ  SRECY +ALKG + C A+  Q   ++ ++S  DL +          E+LEL+ LLSP++Q S        D  E + F    
Subjt:  MKYPTPKGVGNIRGEQMASRECYDAALKGSNTCTAIMNQ---EELVKSDTDLTRC------TPVEQLELLSLLSPKKQAS----RSVIDCVEGMRF----

Query:  --------------------EY--------------ALHF---------------NFQASNSEVE-----YKSLLADLQ-----MVLRSENTNADALVKL
                            EY              A+H                 +QA +S +E      +S LA L+      V RSEN+NADAL KL
Subjt:  --------------------EY--------------ALHF---------------NFQASNSEVE-----YKSLLADLQ-----MVLRSENTNADALVKL

Query:  ASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL
        ASAYE DLARSVPVEIL+ PSILE DLM+V+T  PS MD I+EF+ G + ++  E +K+
Subjt:  ASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL

A0A6J1D7J6 Ribonuclease H1.3e-2043.67Show/hide
Query:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA
        G RFEYAL FNF+ SN+E EY++LLA                 D Q+V+                                     RSEN+NADAL KLA
Subjt:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA

Query:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL
        SAYE DLARSVPVEIL+ PSILE D+M+V+T  PS MDPI+EF+ G  L++  E +K+
Subjt:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL

A0A6J1D9M4 uncharacterized protein LOC1110183093.8e-2042.94Show/hide
Query:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA
        G RFEYAL FNF+ SN+EVEY++LLA                 D Q+V+                                     RSEN+NADAL KLA
Subjt:  GMRFEYALHFNFQASNSEVEYKSLLA-----------------DLQMVL-------------------------------------RSENTNADALVKLA

Query:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKLGHSCS
        SAYEIDLARSVPVEIL+ PSILE D+M+V+T  PS MDPI EF+ G    +  E +K+    +
Subjt:  SAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKLGHSCS

A0A6J1DG06 uncharacterized protein LOC1110204782.0e-2146.46Show/hide
Query:  GMRFEYALHFNFQASNSEVEYKSLLADLQM------------------VLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSL
        G RFEYA+ FNF+ SN+E EY++LLA L++                  V R EN+NADAL K+ASAYE DLA+SVPV+IL+ PSIL+ D+M+++T  PS 
Subjt:  GMRFEYALHFNFQASNSEVEYKSLLADLQM------------------VLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSL

Query:  MDPIIEFLNGKVLKNRDEAQKLGHSCS
        MDPI+EF+ G   +   E +++    +
Subjt:  MDPIIEFLNGKVLKNRDEAQKLGHSCS

A0A6J1DYS0 Ribonuclease H1.6e-2945.23Show/hide
Query:  MMKYPTPKGVGNIRGEQMASRECYDAALKGSNTCT--AIMNQEELVKSDTDLTR---CTPVEQLELLSLLSPKKQASRSVIDCVEGMRFEYALHFNFQAS
        ++KY TP GVG +RGEQ ASRECY +ALKGS+ C   A  +  E ++   DL R     P E+LEL+ LLS +KQ        V  ++ EY      QA 
Subjt:  MMKYPTPKGVGNIRGEQMASRECYDAALKGSNTCT--AIMNQEELVKSDTDLTR---CTPVEQLELLSLLSPKKQASRSVIDCVEGMRFEYALHFNFQAS

Query:  NSEVE-----YKSLLA-----DLQMVLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL
        ++ +E      +S LA     ++  + R+EN+NADAL KLASAYE DLARSVPVEIL+ PSI E DLM++     S MDPI +F+ G   ++  E +KL
Subjt:  NSEVE-----YKSLLA-----DLQMVLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGTATCCTACTCCCAAAGGAGTTGGGAACATCCGAGGTGAACAAATGGCCTCACGTGAATGCTACGATGCAGCTTTGAAGGGATCAAACACTTGTACA
GCCATCATGAATCAAGAAGAGCTGGTCAAGAGTGATACCGACCTGACCAGATGCACGCCAGTAGAGCAGTTAGAGCTTCTCTCATTACTTAGTCCTAAAAAACAA
GCGAGCCGGAGTGTTATTGACTGCGTCGAAGGAATGAGATTCGAGTACGCGCTGCATTTCAATTTCCAAGCTTCTAACAGTGAAGTAGAGTACAAATCACTCCTT
GCCGATCTACAGATGGTCCTAAGATCAGAGAACACGAATGCTGACGCCTTGGTAAAGTTAGCTTCAGCGTATGAAATCGACCTCGCCAGGTCAGTACCAGTTGAA
ATTTTGAACAAGCCTTCAATTTTGGAGCACGACCTAATGGACGTAGAGACTCAACATCCCAGTTTGATGGATCCTATAATTGAGTTCCTAAATGGCAAGGTGCTC
AAAAATCGAGATGAAGCTCAGAAGCTCGGTCACAGTTGCTCACTACATCCTAAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGTATCCTACTCCCAAAGGAGTTGGGAACATCCGAGGTGAACAAATGGCCTCACGTGAATGCTACGATGCAGCTTTGAAGGGATCAAACACTTGTACA
GCCATCATGAATCAAGAAGAGCTGGTCAAGAGTGATACCGACCTGACCAGATGCACGCCAGTAGAGCAGTTAGAGCTTCTCTCATTACTTAGTCCTAAAAAACAA
GCGAGCCGGAGTGTTATTGACTGCGTCGAAGGAATGAGATTCGAGTACGCGCTGCATTTCAATTTCCAAGCTTCTAACAGTGAAGTAGAGTACAAATCACTCCTT
GCCGATCTACAGATGGTCCTAAGATCAGAGAACACGAATGCTGACGCCTTGGTAAAGTTAGCTTCAGCGTATGAAATCGACCTCGCCAGGTCAGTACCAGTTGAA
ATTTTGAACAAGCCTTCAATTTTGGAGCACGACCTAATGGACGTAGAGACTCAACATCCCAGTTTGATGGATCCTATAATTGAGTTCCTAAATGGCAAGGTGCTC
AAAAATCGAGATGAAGCTCAGAAGCTCGGTCACAGTTGCTCACTACATCCTAAGGGATGA
Protein sequenceShow/hide protein sequence
MMKYPTPKGVGNIRGEQMASRECYDAALKGSNTCTAIMNQEELVKSDTDLTRCTPVEQLELLSLLSPKKQASRSVIDCVEGMRFEYALHFNFQASNSEVEYKSLL
ADLQMVLRSENTNADALVKLASAYEIDLARSVPVEILNKPSILEHDLMDVETQHPSLMDPIIEFLNGKVLKNRDEAQKLGHSCSLHPKG