CuGenDBv2

Gene ID	Moc01g10610
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr1:6547359..6548498
RNA-Seq Expression	Moc01g10610
Synteny	Moc01g10610
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035452.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-28

74.47

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Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-28

74.47

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Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-28

74.47

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Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-28

74.47

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Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-28

74.47

Show/hide

Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.5e-28

74.47

Show/hide

Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

A0A5A7TU93 Gag/pol protein

1.5e-28

74.47

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Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

A0A5A7TWB9 Gag/pol protein

1.5e-28

74.47

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Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

A0A5A7TYF5 Gag/pol protein

1.5e-28

74.47

Show/hide

Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

A0A5A7V4M1 Gag/pol protein

1.5e-28

74.47

Show/hide

Query:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS
        +KK  G+ +K + AAA   K KAK A KG CFHCN   HWKRNCPKYLAEKKKA +GKYDLLVLE CLVENDDSAWI+DSG TNHVCSSFQGIS
Subjt:  RKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACAACCCAGTTATGGTCCCACCAATAACCGGAAGTCCCTCTCGGCCAATGAGAGGGTGGGGCCCCTTCTTCAAGTCCCGGAGTCAGCACTTAAGGGAACAC
TCATCTACTCCCCTAAAGTCGGGGAGGAGTGAATTCCATCTTGTGAAGTTATGTTCCCAGCTCCCCACTCAGTCTCGTCCCAAAAATGGTAGGAATATTGAGTCG
GCGACTCGGGCCACTCTTACCCATACAGATCAAAAGATGAGCCCTCACGGGCAGGAGTCCATAACTCACTCAGGATTGAGAATGAGTTACCTGGTCATCCTAAGA
AATAGCAATCTATTAGTTAACGTAAGACTTTTAAGAAGAAAGAAGGCTGCTGGTAAGAGGTCTAAACCTGACTCCGCTGCTGCCGCTGCCAAGAAAGGCAAGGCC
AAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGAACAGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCCAACGAAGGTAAA
TATGATTTACTTGTTTTGGAAATATGTTTAGTGGAGAACGATGACTCTGCCTGGATACTAGATTCAGGAGTCACTAATCACGTTTGTTCTTCATTTCAAGGAATT
AGTGTTGGGTGTGTTGCCCTAAACTCGTAG

mRNA sequence

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Protein sequence

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MNNPVMVPPITGSPSRPMRGWGPFFKSRSQHLREHSSTPLKSGRSEFHLVKLCSQLPTQSRPKNGRNIESATRATLTHTDQKMSPHGQESITHSGLRMSYLVILR
NSNLLVNVRLLRRKKAAGKRSKPDSAAAAAKKGKAKVAEKGKCFHCNMNRHWKRNCPKYLAEKKKANEGKYDLLVLEICLVENDDSAWILDSGVTNHVCSSFQGI
SVGCVALNS

Moc01g10610 (gene) of Bitter gourd (OHB3-1) v2 genome