; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g10730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g10730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr1:6620943..6621959
RNA-Seq ExpressionMoc01g10730
SyntenyMoc01g10730
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-13875.79Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER RK  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]5.6e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]5.6e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]5.6e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]5.6e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

TrEMBL top hitse value%identityAlignment
A0A5A7SUK4 Reverse transcriptase1.2e-13875.79Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER RK  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

A0A5A7T0E2 Reverse transcriptase2.7e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

A0A5A7UXR6 Reverse transcriptase2.7e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

A0A5D3B7E7 Reverse transcriptase2.7e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

A0A5D3C4R1 Reverse transcriptase2.7e-13875.47Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        I+V+IDRFSKYATF+   K CS E T QL+F HVVKLWGV  SI+SDRDGRF G+FWTELFS LG+SLNIS SYHPQTDGQT+RFNSMLEEYLRHF +AR
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK
        Q+NWVQLLDV QFCFN QTSSSTG+SPFEIV GRQP +PH++DHP+ GKNPQA NFTKEW+QT +IARAYLEKASK MKKWAD+KRRPLEFR  D+VLIK
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIK

Query:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR
        LRPEQ+RFRGRKDQRLVRKYEGP+EV+KKVGN SY+V LPTWMKI+ +IHVSNLKPYH D ED +RN+V RP ID   KE+K+ EEILAER R+  RP R
Subjt:  LRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKVGRPVR

Query:  TVQEFLVKCKKLPDAETS
         + E+LVK K LP  ETS
Subjt:  TVQEFLVKCKKLPDAETS

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.1e-2530.45Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        + VV+DRFSK A  V   K+ + E T +++   V+  +G  K II+D D  FT   W +        +  SL Y PQTDGQT+R N  +E+ LR      
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPL-EFRISDKVLI
           WV  + + Q  +N    S+T  +PFEIV    P++  +    ++ K  +    ++E  Q  +  + +L   +  MKK+ D K + + EF+  D V++
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPL-EFRISDKVLI

Query:  KLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLI---IHVSNLKPYHPDLE
        K           K  +L   + GP  V++K G  +Y++ LP  +K H+     HVS+L+ Y  + E
Subjt:  KLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLI---IHVSNLKPYHPDLE

P0CT41 Transposon Tf2-12 polyprotein5.1e-2530.45Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        + VV+DRFSK A  V   K+ + E T +++   V+  +G  K II+D D  FT   W +        +  SL Y PQTDGQT+R N  +E+ LR      
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPL-EFRISDKVLI
           WV  + + Q  +N    S+T  +PFEIV    P++  +    ++ K  +    ++E  Q  +  + +L   +  MKK+ D K + + EF+  D V++
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPL-EFRISDKVLI

Query:  KLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLI---IHVSNLKPYHPDLE
        K           K  +L   + GP  V++K G  +Y++ LP  +K H+     HVS+L+ Y  + E
Subjt:  KLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLI---IHVSNLKPYHPDLE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.5e-2932.19Show/hide
Query:  RLH-----LPLAQGR-----------------RTRVIIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSIL
        RLH     LP+A+GR                    +I+VV+DRFSK A F++T KT      + L F ++    G  ++I SDRD R T   + EL   L
Subjt:  RLH-----LPLAQGR-----------------RTRVIIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSIL

Query:  GSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDARQRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHI-IDHPYTGKNPQAHNFTKEWKQT
        G    +S + HPQTDGQ++R    L   LR +     +NW   L   +F +N   + + GKSPFEI  G  P+ P I  D     ++  A    K  K  
Subjt:  GSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDARQRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHI-IDHPYTGKNPQAHNFTKEWKQT

Query:  IEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIKLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLK
            +  LE A   M+   +++R+PL   I D VL+        F+     ++ + Y GP  VVKK+ + +Y++ L +  K H +I+V  LK
Subjt:  IEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIKLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLK

Q99315 Transposon Ty3-G Gag-Pol polyprotein5.3e-3032.44Show/hide
Query:  RLH-----LPLAQGR-----------------RTRVIIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSIL
        RLH     LP+A+GR                    +I+VV+DRFSK A F++T KT      + L F ++    G  ++I SDRD R T   + EL   L
Subjt:  RLH-----LPLAQGR-----------------RTRVIIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSIL

Query:  GSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDARQRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHI-IDHPYTGKNPQAHNFTKEWKQT
        G    +S + HPQTDGQ++R    L   LR +     +NW   L   +F +N   + + GKSPFEI  G  P+ P I  D     ++  A    K  K  
Subjt:  GSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDARQRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHI-IDHPYTGKNPQAHNFTKEWKQT

Query:  IEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIKLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKP--YHPD
            +  LE A   M+   +++R+PL   I D VL+        F+     ++ + Y GP  VVKK+ + +Y++ L +  K H +I+V  LK   Y PD
Subjt:  IEIARAYLEKASKHMKKWADRKRRPLEFRISDKVLIKLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKP--YHPD

Q9UR07 Transposon Tf2-11 polyprotein5.1e-2530.45Show/hide
Query:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR
        + VV+DRFSK A  V   K+ + E T +++   V+  +G  K II+D D  FT   W +        +  SL Y PQTDGQT+R N  +E+ LR      
Subjt:  IIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRFNSMLEEYLRHFFDAR

Query:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPL-EFRISDKVLI
           WV  + + Q  +N    S+T  +PFEIV    P++  +    ++ K  +    ++E  Q  +  + +L   +  MKK+ D K + + EF+  D V++
Subjt:  QRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPL-EFRISDKVLI

Query:  KLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLI---IHVSNLKPYHPDLE
        K           K  +L   + GP  V++K G  +Y++ LP  +K H+     HVS+L+ Y  + E
Subjt:  KLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLI---IHVSNLKPYHPDLE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGTGTGTCGCTCGACTTCATCTCCCACTTGCCCAAGGTAGGAGAACACGAGTCATTATTGTCGTTATTGATCGATTTTCCAAGTATGCAACTTTCGTT
TCGACTCCCAAAACGTGTTCCACTGAGCTGACGGTGCAACTATACTTTAATCATGTAGTAAAGCTATGGGGAGTTCTGAAGAGCATCATTAGCGACAGGGATGGC
CGATTTACAGGGACCTTCTGGACTGAACTTTTTTCTATTCTGGGTTCAAGCCTAAACATTTCCTTGAGTTATCACCCACAGACCGATGGTCAGACAAAGAGATTC
AACAGCATGCTCGAGGAATACCTACGTCACTTCTTCGATGCCAGACAAAGGAACTGGGTCCAGCTGTTAGATGTGACTCAATTCTGTTTTAACGGCCAAACGAGC
TCTTCAACAGGGAAGAGCCCCTTTGAGATTGTGTGCGGAAGACAGCCGTCTATGCCGCATATCATTGACCACCCATATACTGGGAAAAATCCTCAAGCCCATAAC
TTCACAAAGGAATGGAAGCAGACGATAGAGATTGCTCGAGCATATTTGGAAAAAGCTTCCAAGCACATGAAGAAATGGGCCGACCGCAAGAGACGCCCTCTCGAG
TTTCGAATAAGTGACAAAGTTCTTATTAAGCTGAGGCCAGAACAGATTCGTTTCCGAGGGCGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCAATGGAA
GTTGTTAAGAAGGTGGGGAATGTCTCGTATAAGGTGGTGTTACCAACTTGGATGAAGATCCACCTGATAATCCATGTAAGCAATTTAAAACCTTATCACCCCGAC
CTTGAGGATGACGAACGTAATATTGTTGTGCGGCCCGCCATCGACTTCAAACTAAAGGAAGAAAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTG
GGGAGACCCGTTCGCACAGTTCAGGAATTCCTCGTCAAATGCAAAAAGTTACCTGATGCAGAGACCAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGTGTGTCGCTCGACTTCATCTCCCACTTGCCCAAGGTAGGAGAACACGAGTCATTATTGTCGTTATTGATCGATTTTCCAAGTATGCAACTTTCGTT
TCGACTCCCAAAACGTGTTCCACTGAGCTGACGGTGCAACTATACTTTAATCATGTAGTAAAGCTATGGGGAGTTCTGAAGAGCATCATTAGCGACAGGGATGGC
CGATTTACAGGGACCTTCTGGACTGAACTTTTTTCTATTCTGGGTTCAAGCCTAAACATTTCCTTGAGTTATCACCCACAGACCGATGGTCAGACAAAGAGATTC
AACAGCATGCTCGAGGAATACCTACGTCACTTCTTCGATGCCAGACAAAGGAACTGGGTCCAGCTGTTAGATGTGACTCAATTCTGTTTTAACGGCCAAACGAGC
TCTTCAACAGGGAAGAGCCCCTTTGAGATTGTGTGCGGAAGACAGCCGTCTATGCCGCATATCATTGACCACCCATATACTGGGAAAAATCCTCAAGCCCATAAC
TTCACAAAGGAATGGAAGCAGACGATAGAGATTGCTCGAGCATATTTGGAAAAAGCTTCCAAGCACATGAAGAAATGGGCCGACCGCAAGAGACGCCCTCTCGAG
TTTCGAATAAGTGACAAAGTTCTTATTAAGCTGAGGCCAGAACAGATTCGTTTCCGAGGGCGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCAATGGAA
GTTGTTAAGAAGGTGGGGAATGTCTCGTATAAGGTGGTGTTACCAACTTGGATGAAGATCCACCTGATAATCCATGTAAGCAATTTAAAACCTTATCACCCCGAC
CTTGAGGATGACGAACGTAATATTGTTGTGCGGCCCGCCATCGACTTCAAACTAAAGGAAGAAAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTG
GGGAGACCCGTTCGCACAGTTCAGGAATTCCTCGTCAAATGCAAAAAGTTACCTGATGCAGAGACCAGCTAG
Protein sequenceShow/hide protein sequence
MGECVARLHLPLAQGRRTRVIIVVIDRFSKYATFVSTPKTCSTELTVQLYFNHVVKLWGVLKSIISDRDGRFTGTFWTELFSILGSSLNISLSYHPQTDGQTKRF
NSMLEEYLRHFFDARQRNWVQLLDVTQFCFNGQTSSSTGKSPFEIVCGRQPSMPHIIDHPYTGKNPQAHNFTKEWKQTIEIARAYLEKASKHMKKWADRKRRPLE
FRISDKVLIKLRPEQIRFRGRKDQRLVRKYEGPMEVVKKVGNVSYKVVLPTWMKIHLIIHVSNLKPYHPDLEDDERNIVVRPAIDFKLKEEKEAEEILAERTRKV
GRPVRTVQEFLVKCKKLPDAETS