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Moc01g12340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g12340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:7483118..7488066
RNA-Seq ExpressionMoc01g12340
SyntenyMoc01g12340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]2.7e-2636.67Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------
        K+    KD  M  YL  +++ L  FE + V QV  S+N+N DALA LA AYETDL ++V+V I+ N +I+E ++M+++ PE                   
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------

Query:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV P++  Y++ ++HEG CG+H    +L+ K++RQG YWP +++D++KF
Subjt:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

XP_022151715.1 uncharacterized protein LOC111019628 [Momordica charantia]7.9e-2638.89Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------
        K+    KD  M  YL  +++ L  FE + V QV  S+N+N DALA LA AYETDL ++V VEI+ N +I++ ++M+ID P                    
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------

Query:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV P+E  Y+L + HEG CG+H    +L+ K++RQG YWPT+E+D+++F
Subjt:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

XP_022155127.1 uncharacterized protein LOC111022266 [Momordica charantia]6.1e-2638.33Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRP--------------------
        K+    KD  M  YL  +++ L  F+ + V QV    N+N+DALA LAL YETDL ++V+VEI+ N +I+E +MMDID P                    
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRP--------------------

Query:  -----------------EVLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV  +E  Y+L ++HE  CG+H    +L+ K++RQG YWPTL++D+++F
Subjt:  -----------------EVLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

XP_022156778.1 uncharacterized protein LOC111023609 [Momordica charantia]1.0e-2537.78Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------
        K+    KD  M  YL  +++ LD F+ + V QV  S+N+N DALA LA AYETDL ++  VEI+ + +I+E ++M++D P                    
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------

Query:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV P+E  Y+L ++HEG CG+H    +L+ K++RQG YWPT+E+D ++F
Subjt:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

XP_022158219.1 protein NYNRIN-like [Momordica charantia]1.2e-2637.38Show/hide
Query:  REQSIPSTEELESIPIIGPKKST---------------NAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHN
        RE S P TEELE +P++  +K                  AKD  M  YL  +++ L  F  + V ++  ++N+N DALA LA AYETDL ++V VEI+ N
Subjt:  REQSIPSTEELESIPIIGPKKST---------------NAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHN

Query:  SNIVEVEMMDIDRPE-------------------------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQ
         +I E ++M+I  PE                                      LY+RG+SLPLL+C+ P+E  YVL +VHEG CG+H    +L+ K++RQ
Subjt:  SNIVEVEMMDIDRPE-------------------------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQ

Query:  GCYWPTLEKDSEKF
        G YWPTL +D++KF
Subjt:  GCYWPTLEKDSEKF

TrEMBL top hitse value%identityAlignment
A0A6J1CSJ1 Ribonuclease H1.3e-2636.67Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------
        K+    KD  M  YL  +++ L  FE + V QV  S+N+N DALA LA AYETDL ++V+V I+ N +I+E ++M+++ PE                   
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------

Query:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV P++  Y++ ++HEG CG+H    +L+ K++RQG YWP +++D++KF
Subjt:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

A0A6J1DBZ0 uncharacterized protein LOC1110196283.8e-2638.89Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------
        K+    KD  M  YL  +++ L  FE + V QV  S+N+N DALA LA AYETDL ++V VEI+ N +I++ ++M+ID P                    
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------

Query:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV P+E  Y+L + HEG CG+H    +L+ K++RQG YWPT+E+D+++F
Subjt:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

A0A6J1DNI3 uncharacterized protein LOC1110222662.9e-2638.33Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRP--------------------
        K+    KD  M  YL  +++ L  F+ + V QV    N+N+DALA LAL YETDL ++V+VEI+ N +I+E +MMDID P                    
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRP--------------------

Query:  -----------------EVLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV  +E  Y+L ++HE  CG+H    +L+ K++RQG YWPTL++D+++F
Subjt:  -----------------EVLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

A0A6J1DRK0 Ribonuclease H5.0e-2637.78Show/hide
Query:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------
        K+    KD  M  YL  +++ LD F+ + V QV  S+N+N DALA LA AYETDL ++  VEI+ + +I+E ++M++D P                    
Subjt:  KKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPE-------------------

Query:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF
                           LY+RG+SLPLL+CV P+E  Y+L ++HEG CG+H    +L+ K++RQG YWPT+E+D ++F
Subjt:  ------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKF

A0A6J1DYS0 Ribonuclease H5.9e-2737.38Show/hide
Query:  REQSIPSTEELESIPIIGPKKST---------------NAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHN
        RE S P TEELE +P++  +K                  AKD  M  YL  +++ L  F  + V ++  ++N+N DALA LA AYETDL ++V VEI+ N
Subjt:  REQSIPSTEELESIPIIGPKKST---------------NAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHN

Query:  SNIVEVEMMDIDRPE-------------------------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQ
         +I E ++M+I  PE                                      LY+RG+SLPLL+C+ P+E  YVL +VHEG CG+H    +L+ K++RQ
Subjt:  SNIVEVEMMDIDRPE-------------------------------------VLYKRGYSLPLLQCVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQ

Query:  GCYWPTLEKDSEKF
        G YWPTL +D++KF
Subjt:  GCYWPTLEKDSEKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGCTCAGCCGACTTCCTTACCCTAGGGGTATTGTGAATCCTTGGATGGGACTCGACCTAATTAAAGAGATGTCCCTCCCCGTTGGTCGGTTTCTCGAGCCAGA
AGGTTTACCCAGAAGGTTAGTGTGTGTGATGGGCACTGAACCTGACGAGCCACGGTCAGCTGCTCCCGCAACCCCGACAGAGGCTAATGGCATGGACCTACTCCCCAACC
CATCAACTAACATCCGTGATGCTCTTACAGTGGAACTAGCCCGAGCACCGAGTCCAGATGCGCAAGTTGCGGAGGAAACACCTAAGATAGCCGCTTGGGAAAGAGAACAG
AGCATTCCCTCAACCGAAGAGCTCGAGTCAATTCCCATCATAGGGCCTAAGAAATCCACCAATGCCAAGGATGAATGGATGGCCTCGTACCTCCAAACGCTGCAGACACT
TTTAGACTCCTTTGAGGTTCATACCGTCAAGCAAGTCCTGTGGTCCAAGAATGCCAATGTCGATGCATTGGCTTACCTCGCATTAGCCTACGAGACCGATCTCCTGCAAA
CAGTGATGGTCGAGATCATGCATAATTCCAACATCGTCGAGGTCGAGATGATGGATATAGACCGTCCAGAAGTCCTTTACAAAAGAGGGTACTCCCTCCCACTTCTCCAA
TGTGTGGGTCCCGACGAGGCTGGGTACGTACTCAGCAAAGTCCATGAAGGCGATTGTGGAGACCATCTAGTCGGCTGGACGCTCGCTTACAAGATCTTACGCCAGGGATG
CTACTGGCCGACCCTAGAGAAAGATTCTGAGAAGTTTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGCTCAGCCGACTTCCTTACCCTAGGGGTATTGTGAATCCTTGGATGGGACTCGACCTAATTAAAGAGATGTCCCTCCCCGTTGGTCGGTTTCTCGAGCCAGA
AGGTTTACCCAGAAGGTTAGTGTGTGTGATGGGCACTGAACCTGACGAGCCACGGTCAGCTGCTCCCGCAACCCCGACAGAGGCTAATGGCATGGACCTACTCCCCAACC
CATCAACTAACATCCGTGATGCTCTTACAGTGGAACTAGCCCGAGCACCGAGTCCAGATGCGCAAGTTGCGGAGGAAACACCTAAGATAGCCGCTTGGGAAAGAGAACAG
AGCATTCCCTCAACCGAAGAGCTCGAGTCAATTCCCATCATAGGGCCTAAGAAATCCACCAATGCCAAGGATGAATGGATGGCCTCGTACCTCCAAACGCTGCAGACACT
TTTAGACTCCTTTGAGGTTCATACCGTCAAGCAAGTCCTGTGGTCCAAGAATGCCAATGTCGATGCATTGGCTTACCTCGCATTAGCCTACGAGACCGATCTCCTGCAAA
CAGTGATGGTCGAGATCATGCATAATTCCAACATCGTCGAGGTCGAGATGATGGATATAGACCGTCCAGAAGTCCTTTACAAAAGAGGGTACTCCCTCCCACTTCTCCAA
TGTGTGGGTCCCGACGAGGCTGGGTACGTACTCAGCAAAGTCCATGAAGGCGATTGTGGAGACCATCTAGTCGGCTGGACGCTCGCTTACAAGATCTTACGCCAGGGATG
CTACTGGCCGACCCTAGAGAAAGATTCTGAGAAGTTTGCATGA
Protein sequenceShow/hide protein sequence
MGKLSRLPYPRGIVNPWMGLDLIKEMSLPVGRFLEPEGLPRRLVCVMGTEPDEPRSAAPATPTEANGMDLLPNPSTNIRDALTVELARAPSPDAQVAEETPKIAAWEREQ
SIPSTEELESIPIIGPKKSTNAKDEWMASYLQTLQTLLDSFEVHTVKQVLWSKNANVDALAYLALAYETDLLQTVMVEIMHNSNIVEVEMMDIDRPEVLYKRGYSLPLLQ
CVGPDEAGYVLSKVHEGDCGDHLVGWTLAYKILRQGCYWPTLEKDSEKFA