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Moc01g12360 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g12360
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:7501739..7503351
RNA-Seq ExpressionMoc01g12360
SyntenyMoc01g12360
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]3.5e-1165.52Show/hide
Query:  GARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIER
        GA D+ ELI+FL++N DVFAWSHEDMP IDPKIM H        RP+KQKRRP N ER
Subjt:  GARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIER

XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]1.2e-0655.17Show/hide
Query:  GARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVHR--------PIKQKRRPANIER
        G  ++  LINFL++N DVFAWS EDMP ID  +MVHR        P+KQKRR  N ER
Subjt:  GARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVHR--------PIKQKRRPANIER

XP_022159205.1 uncharacterized protein LOC111025624 [Momordica charantia]4.7e-0856.9Show/hide
Query:  ARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIERL
        A  K EL++FLK N DVFAWSH+DMP IDP IMVH        RP++QKRR  + ER+
Subjt:  ARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIERL

XP_023917426.1 uncharacterized protein LOC112028970 [Quercus suber]1.8e-0741.11Show/hide
Query:  SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVHR--------PIKQKRRPANIER
        +++L+ G A KT  +G+  +P               +A+LI FL+ N+DVFAWSH+DMP I PKI+ HR        PIKQ+RR    ER
Subjt:  SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVHR--------PIKQKRRPANIER

XP_030964682.1 uncharacterized protein LOC115985938 [Quercus lobata]8.8e-0731.43Show/hide
Query:  KLNRGTDNSPKESYSGVYLGEHLYGYLGMGSPNHAY--------------SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDV
        K+   TDN   E      L    Y  +  G  NH++              +++LV G A KT  +G+   P   T             +LI FLK N+D 
Subjt:  KLNRGTDNSPKESYSGVYLGEHLYGYLGMGSPNHAY--------------SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDV

Query:  FAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIER
        FAWSHEDMP I P+++ H        +P++Q+RR    ER
Subjt:  FAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIER

TrEMBL top hitse value%identityAlignment
A0A2N9F3Z1 Ribonuclease H3.3e-0741.67Show/hide
Query:  SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRR
        +++L  GH  +T  +G+   P+              K  L+ FLK N DVFAWSHEDMP IDP I++H        RP+KQKRR
Subjt:  SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRR

A0A2N9FH63 Reverse transcriptase4.3e-0741.35Show/hide
Query:  LGMGSPNHAYSLD---LVLGHAGKTVGVG-SITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPA
        LG G  N   +++   +++  +G+   +G    +P  TT   N     R K  L+ FLK N DVFAWSHEDMP IDP I+ H        RPIKQKRR  
Subjt:  LGMGSPNHAYSLD---LVLGHAGKTVGVG-SITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPA

Query:  NIER
          ER
Subjt:  NIER

A0A2N9HEY9 RNase H domain-containing protein1.9e-0744.05Show/hide
Query:  SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRR
        +++L  GH  KT  VG+   P+              K  L+ FLK+N+DVFAWSHEDMP I+P I+ H        RPIKQKRR
Subjt:  SLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRR

A0A6J1C617 Ribonuclease H1.7e-1165.52Show/hide
Query:  GARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIER
        GA D+ ELI+FL++N DVFAWSHEDMP IDPKIM H        RP+KQKRRP N ER
Subjt:  GARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIER

A0A6J1DY08 uncharacterized protein LOC1110256242.3e-0856.9Show/hide
Query:  ARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIERL
        A  K EL++FLK N DVFAWSH+DMP IDP IMVH        RP++QKRR  + ER+
Subjt:  ARDKAELINFLKTNVDVFAWSHEDMPEIDPKIMVH--------RPIKQKRRPANIERL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAGGACGAGCTGGCCAAAGATGAAACTAAGCTGAACAGAGGCACTGATAACTCTCCAAAAGAGAGTTATTCTGGTGTTTATTTGGGTGAACATCTATATGGATA
CTTAGGAATGGGGTCCCCTAATCATGCCTATAGTTTGGATTTAGTGCTTGGGCACGCCGGTAAAACAGTTGGAGTTGGCTCCATTACTCAACCGAGAGAAACAACTGATT
ACTGGAACCATACTGGGGGGGCTCGAGATAAAGCTGAGCTTATCAACTTCTTGAAGACTAATGTCGACGTGTTCGCGTGGTCACATGAAGATATGCCCGAAATCGACCCG
AAGATTATGGTTCACCGACCTATAAAACAAAAACGTCGCCCTGCAAATATTGAGAGGCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCAGGACGAGCTGGCCAAAGATGAAACTAAGCTGAACAGAGGCACTGATAACTCTCCAAAAGAGAGTTATTCTGGTGTTTATTTGGGTGAACATCTATATGGATA
CTTAGGAATGGGGTCCCCTAATCATGCCTATAGTTTGGATTTAGTGCTTGGGCACGCCGGTAAAACAGTTGGAGTTGGCTCCATTACTCAACCGAGAGAAACAACTGATT
ACTGGAACCATACTGGGGGGGCTCGAGATAAAGCTGAGCTTATCAACTTCTTGAAGACTAATGTCGACGTGTTCGCGTGGTCACATGAAGATATGCCCGAAATCGACCCG
AAGATTATGGTTCACCGACCTATAAAACAAAAACGTCGCCCTGCAAATATTGAGAGGCTATAA
Protein sequenceShow/hide protein sequence
MSQDELAKDETKLNRGTDNSPKESYSGVYLGEHLYGYLGMGSPNHAYSLDLVLGHAGKTVGVGSITQPRETTDYWNHTGGARDKAELINFLKTNVDVFAWSHEDMPEIDP
KIMVHRPIKQKRRPANIERL