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Moc01g12460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g12460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr1:7590091..7595214
RNA-Seq ExpressionMoc01g12460
SyntenyMoc01g12460
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]7.6e-0669.77Show/hide
Query:  SLELALYASLKYSSQLNDLQLLHGNHSRLTGRTTLDKALGFSI
        SLELA+YA +KYSSQLNDLQLL GNHS L GRTT DK +  ++
Subjt:  SLELALYASLKYSSQLNDLQLLHGNHSRLTGRTTLDKALGFSI
TrEMBL top hitse value%identityAlignment
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein3.7e-0669.77Show/hide
Query:  SLELALYASLKYSSQLNDLQLLHGNHSRLTGRTTLDKALGFSI
        SLELA+YA +KYSSQLNDLQLL GNHS L GRTT DK +  ++
Subjt:  SLELALYASLKYSSQLNDLQLLHGNHSRLTGRTTLDKALGFSI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCATTAGAACTTGCACTTTATGCTTCATTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAACCACAGCAGACTTACGGGTCGTACC
ACTTTGGATAAGGCACTGGGGTTTTCCATTGCTTCTCCCATCTCTGAGCATATTCTTTCCCTGCATGGTCTCTTCGACATTTCCATTGGAGTCCCCACCTTCTTC
CCACCTTTTGGTCTCACACAACTTCATACGCCCCACAGCCATTATCTTCCTCCATCTGACGCCTCCCTCCGCCGCCCTCCTCTGCCCTCTCTTGCCGACGACAGC
TTGCCGCTTGCCCCATTCAAATCGGTCGTTCCGCCGCCACCGTCCCGTGCCGTCGCACCTCACAAAGCAGATCCGCGAATCGTCGTCCCGCCGCTCATCTTTAAG
GTCGTCGTCCCGTCCCGCCGCTCACCTCACGAAGCAGATCCGCGCACCACTCACCTTCAGGCCGCCATCCACGAACTAGAACCAGACCCGCCACCGCCGCACCCA
ACCGCAGCCGCCCTCCCCGCTGCAATTCTGCCGCAACACATACCATATCTACCCGATCCGCCACGCCCCAAATTCAGATCGGTCGTTCCGTCGCTGTCGTCCCGT
GTCGCCGCACCTCACGAAGCAGATCTGTGCACCGCCGCTCACCTCACGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCATTAGAACTTGCACTTTATGCTTCATTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAACCACAGCAGACTTACGGGTCGTACC
ACTTTGGATAAGGCACTGGGGTTTTCCATTGCTTCTCCCATCTCTGAGCATATTCTTTCCCTGCATGGTCTCTTCGACATTTCCATTGGAGTCCCCACCTTCTTC
CCACCTTTTGGTCTCACACAACTTCATACGCCCCACAGCCATTATCTTCCTCCATCTGACGCCTCCCTCCGCCGCCCTCCTCTGCCCTCTCTTGCCGACGACAGC
TTGCCGCTTGCCCCATTCAAATCGGTCGTTCCGCCGCCACCGTCCCGTGCCGTCGCACCTCACAAAGCAGATCCGCGAATCGTCGTCCCGCCGCTCATCTTTAAG
GTCGTCGTCCCGTCCCGCCGCTCACCTCACGAAGCAGATCCGCGCACCACTCACCTTCAGGCCGCCATCCACGAACTAGAACCAGACCCGCCACCGCCGCACCCA
ACCGCAGCCGCCCTCCCCGCTGCAATTCTGCCGCAACACATACCATATCTACCCGATCCGCCACGCCCCAAATTCAGATCGGTCGTTCCGTCGCTGTCGTCCCGT
GTCGCCGCACCTCACGAAGCAGATCTGTGCACCGCCGCTCACCTCACGAAGTAG
Protein sequenceShow/hide protein sequence
MLSLELALYASLKYSSQLNDLQLLHGNHSRLTGRTTLDKALGFSIASPISEHILSLHGLFDISIGVPTFFPPFGLTQLHTPHSHYLPPSDASLRRPPLPSLADDS
LPLAPFKSVVPPPPSRAVAPHKADPRIVVPPLIFKVVVPSRRSPHEADPRTTHLQAAIHELEPDPPPPHPTAAALPAAILPQHIPYLPDPPRPKFRSVVPSLSSR
VAAPHEADLCTAAHLTK