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Moc01g12690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g12690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr1:7704833..7706776
RNA-Seq ExpressionMoc01g12690
SyntenyMoc01g12690
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6139964.1 hypothetical protein GIB67_011674, partial [Kingdonia uniflora]1.2e-2395.24Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRSSALLILIQDLYHLMM  ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

MBA0570956.1 hypothetical protein [Gossypium lobatum]8.8e-1982.54Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        S+VLVRGGRVKDL  VRY I+RGTLD +GVKDRQQGRSS L ILIQDLYHLMM  ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

MBA0870852.1 hypothetical protein [Gossypium schwendimanii]1.0e-1984.13Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        SVVLVRGG+VKDLP VRY I+RGTLD +GVKDRQQG SS L ILIQDLYHLMMP ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

PHU22444.1 30S ribosomal protein S12, chloroplastic [Capsicum chinense]4.7e-2085.71Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        SVVLVRGGRVKDLPGVRYHI+RG LDAV VKD QQG SS L ILIQDLY+LMMP ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

YP_009484885.1 ribosomal protein S12 [Cyamopsis tetragonoloba]5.3e-1697.92Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDL
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRSSALLILIQDL
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDL

TrEMBL top hitse value%identityAlignment
A0A2G3CUN9 30S ribosomal protein S12, chloroplastic2.3e-2085.71Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        SVVLVRGGRVKDLPGVRYHI+RG LDAV VKD QQG SS L ILIQDLY+LMMP ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

A0A3G1J7X1 Ribosomal protein S122.6e-1697.92Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDL
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRSSALLILIQDL
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDL

A0A7J7LBS2 Uncharacterized protein5.7e-2495.24Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRSSALLILIQDLYHLMM  ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

A0A7J8N211 Uncharacterized protein4.3e-1982.54Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        S+VLVRGGRVKDL  VRY I+RGTLD +GVKDRQQGRSS L ILIQDLYHLMM  ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

A0A7J9MIE9 Uncharacterized protein5.0e-2084.13Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV
        SVVLVRGG+VKDLP VRY I+RGTLD +GVKDRQQG SS L ILIQDLYHLMMP ESLETCEV
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEV

SwissProt top hitse value%identityAlignment
P06368 30S ribosomal protein S12, chloroplastic4.0e-14100Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS
        SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic2.1e-1597.56Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSAL
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRSSAL
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic2.1e-1597.56Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSAL
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRSSAL
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic2.1e-1597.56Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSAL
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRSSAL
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSAL

Q85FG4 30S ribosomal protein S12, chloroplastic1.4e-1469.64Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYE
        SVVLVRGGRVKDLPGVRYHI+RG LDAVGVKDR++GRSSAL  ++       +PY+
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYE

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein2.8e-0760.53Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS
        S VL+RGGRVKD PGV+ H IRG  D +G+  R++GRS
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS

ATCG00065.1 ribosomal protein S12A3.7e-1597.37Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRS
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS

ATCG00905.1 ribosomal protein S12C3.7e-1597.37Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRS
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS

ATCG01230.1 ribosomal protein S12B3.7e-1597.37Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS
        SVVLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRS
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein2.8e-0760.53Show/hide
Query:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS
        S VL+RGGRVKD PGV+ H IRG  D +G+  R++GRS
Subjt:  SVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGGTTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTATTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCA
ACAAGGACGTTCTAGTGCATTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATATGAATCGCTAGAAACATGTGAAGTGTCCGTTGCATTTTATCGTTCAG
TTAAATCGAGCACAATCCAAGTCAAGATCAAAGCATGTGTTAAAGTCAGGTCTGTTGCATTTTATCTTTCGACTAAATCGAACTCGATCGAATTTGAAGTCAAAGCCTCT
ATTAAAGACAGATCCGTTGCATTTTATCTTTTGGTTAAATCGAACCTGATACAAGTCGAGCTTAAAGCTTGTGTTAAAGTCAGGTCCATTGCATTTTATCTTTCGATTAA
ATCGAACCCGATCCAGATCGAAGTCGAAGCCTGTGTCAAGCCAGGTCCATCTTTATCTTGCCTTTTTGCCTTCTCAATACTTTGTCTTTTTGCGTTTGTCTACCTTACAG
TTCTTCAAGAACACATAAAGGGAGGTAAGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACGGTTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTATTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCA
ACAAGGACGTTCTAGTGCATTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATATGAATCGCTAGAAACATGTGAAGTGTCCGTTGCATTTTATCGTTCAG
TTAAATCGAGCACAATCCAAGTCAAGATCAAAGCATGTGTTAAAGTCAGGTCTGTTGCATTTTATCTTTCGACTAAATCGAACTCGATCGAATTTGAAGTCAAAGCCTCT
ATTAAAGACAGATCCGTTGCATTTTATCTTTTGGTTAAATCGAACCTGATACAAGTCGAGCTTAAAGCTTGTGTTAAAGTCAGGTCCATTGCATTTTATCTTTCGATTAA
ATCGAACCCGATCCAGATCGAAGTCGAAGCCTGTGTCAAGCCAGGTCCATCTTTATCTTGCCTTTTTGCCTTCTCAATACTTTGTCTTTTTGCGTTTGTCTACCTTACAG
TTCTTCAAGAACACATAAAGGGAGGTAAGCTGTAG
Protein sequenceShow/hide protein sequence
MYGSVVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPYESLETCEVSVAFYRSVKSSTIQVKIKACVKVRSVAFYLSTKSNSIEFEVKAS
IKDRSVAFYLLVKSNLIQVELKACVKVRSIAFYLSIKSNPIQIEVEACVKPGPSLSCLFAFSILCLFAFVYLTVLQEHIKGGKL