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Moc01g12880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g12880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr1:7837745..7838167
RNA-Seq ExpressionMoc01g12880
SyntenyMoc01g12880
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX95313.1 hypothetical protein [Oryza sativa Japonica Group]7.5e-0431.2Show/hide
Query:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD---VGFSPPRLAL----WLRFH----HICAESDCLEVVKLLSSHMEILGETEVLVAD
        P   WM +N D S +  L Q G+G + ++   ++IF+   F+D          LAL     L  H     IC E+DCLE V L+ S   +  E   L+ D
Subjt:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD---VGFSPPRLAL----WLRFH----HICAESDCLEVVKLLSSHMEILGETEVLVAD

Query:  IRGLQMSLGKVTLSHVHRDQNKVAN
        I  L     ++ +  V R QN V++
Subjt:  IRGLQMSLGKVTLSHVHRDQNKVAN

ABA99010.1 expressed protein [Oryza sativa Japonica Group]8.9e-0529.69Show/hide
Query:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD--------------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVL
        P   WM INTD S +      GVGA+V+D    ++ ALS+ +D               G S   LAL      +  E+DCLE +KLL S  +++     +
Subjt:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD--------------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVL

Query:  VADIRGLQMSLGKVTLSHVHRDQNKVAN
        + +   L     ++  S   R QN+V++
Subjt:  VADIRGLQMSLGKVTLSHVHRDQNKVAN

CAH66131.1 OSIGBa0135L04.5 [Oryza sativa]1.5e-0429.27Show/hide
Query:  ELPNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVDVGFSP-----------PRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLV
        E PN  WM +N D S +    + G+GA++++    +IF+   F+D    P             +AL      I  E DC E VKL+SS  +   E   +V
Subjt:  ELPNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVDVGFSP-----------PRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLV

Query:  ADIRGLQMSLGKVTLSHVHRDQN
         DI+ L     ++ +  +H +QN
Subjt:  ADIRGLQMSLGKVTLSHVHRDQN

EEC73134.1 hypothetical protein OsI_07152 [Oryza sativa Indica Group]2.8e-0630.4Show/hide
Query:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD-----------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLVAD
        P   WM +N D S  P   + G+GA++++    +IF+   F+                   LAL      I  ESDCLE+++LL+S  ++L     +V +
Subjt:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD-----------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLVAD

Query:  IRGLQMSLGKVTLSHVHRDQNKVAN
        IR L     +V+ + VHR+QN+V++
Subjt:  IRGLQMSLGKVTLSHVHRDQNKVAN

TrEMBL top hitse value%identityAlignment
A0A803PDD5 Uncharacterized protein1.6e-0432.56Show/hide
Query:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVDVGFSPPRLALWLRFHHI-----------CAESDCLEVVKLLSSHMEILGETEVLVAD
        P  + + +N DA+ N  L   G GALV+D   N+I A+S+ V+  F    +     FH +             E+D L V   L+S    L     L++D
Subjt:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVDVGFSPPRLALWLRFHHI-----------CAESDCLEVVKLLSSHMEILGETEVLVAD

Query:  IRGLQMSLGKVTLSHVHRDQNKVANCFGK
        IR L      VT+SHV RD N  A+   K
Subjt:  IRGLQMSLGKVTLSHVHRDQNKVANCFGK

A3CHL3 RNase H domain-containing protein4.3e-0529.69Show/hide
Query:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD--------------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVL
        P   WM INTD S +      GVGA+V+D    ++ ALS+ +D               G S   LAL      +  E+DCLE +KLL S  +++     +
Subjt:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD--------------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVL

Query:  VADIRGLQMSLGKVTLSHVHRDQNKVAN
        + +   L     ++  S   R QN+V++
Subjt:  VADIRGLQMSLGKVTLSHVHRDQNKVAN

B8AHI8 Uncharacterized protein1.3e-0630.4Show/hide
Query:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD-----------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLVAD
        P   WM +N D S  P   + G+GA++++    +IF+   F+                   LAL      I  ESDCLE+++LL+S  ++L     +V +
Subjt:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD-----------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLVAD

Query:  IRGLQMSLGKVTLSHVHRDQNKVAN
        IR L     +V+ + VHR+QN+V++
Subjt:  IRGLQMSLGKVTLSHVHRDQNKVAN

Q01M84 OSIGBa0135L04.5 protein7.3e-0529.27Show/hide
Query:  ELPNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVDVGFSP-----------PRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLV
        E PN  WM +N D S +    + G+GA++++    +IF+   F+D    P             +AL      I  E DC E VKL+SS  +   E   +V
Subjt:  ELPNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVDVGFSP-----------PRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLV

Query:  ADIRGLQMSLGKVTLSHVHRDQN
         DI+ L     ++ +  +H +QN
Subjt:  ADIRGLQMSLGKVTLSHVHRDQN

Q2QQB4 Expressed protein4.3e-0529.69Show/hide
Query:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD--------------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVL
        P   WM INTD S +      GVGA+V+D    ++ ALS+ +D               G S   LAL      +  E+DCLE +KLL S  +++     +
Subjt:  PNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVD--------------VGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVL

Query:  VADIRGLQMSLGKVTLSHVHRDQNKVAN
        + +   L     ++  S   R QN+V++
Subjt:  VADIRGLQMSLGKVTLSHVHRDQNKVAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCGCCGGATCTTCAGCTTCCTCGAAGCTCACAGGAGTTACCCAATGCCGAGTGGATGTACATTAATACTGATGCTTCTTCCAATCCGTGGCTTCCTCAAACAGG
AGTAGGAGCTTTAGTTCAAGATAAAGATTTGAACATCATTTTTGCACTGTCTCAATTTGTGGATGTCGGATTCTCACCTCCCCGCCTTGCTCTCTGGTTGAGGTTCCATC
ATATTTGCGCGGAGTCTGATTGTCTTGAAGTCGTGAAGCTTCTTTCTTCACACATGGAAATTTTGGGAGAGACGGAGGTTTTGGTTGCTGACATTCGTGGGCTTCAAATG
AGTTTGGGGAAAGTTACTTTAAGCCATGTGCACAGAGATCAAAATAAAGTGGCCAACTGTTTTGGCAAAATATGCGTTGTTTATGAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCGCCGGATCTTCAGCTTCCTCGAAGCTCACAGGAGTTACCCAATGCCGAGTGGATGTACATTAATACTGATGCTTCTTCCAATCCGTGGCTTCCTCAAACAGG
AGTAGGAGCTTTAGTTCAAGATAAAGATTTGAACATCATTTTTGCACTGTCTCAATTTGTGGATGTCGGATTCTCACCTCCCCGCCTTGCTCTCTGGTTGAGGTTCCATC
ATATTTGCGCGGAGTCTGATTGTCTTGAAGTCGTGAAGCTTCTTTCTTCACACATGGAAATTTTGGGAGAGACGGAGGTTTTGGTTGCTGACATTCGTGGGCTTCAAATG
AGTTTGGGGAAAGTTACTTTAAGCCATGTGCACAGAGATCAAAATAAAGTGGCCAACTGTTTTGGCAAAATATGCGTTGTTTATGAAGCTTAA
Protein sequenceShow/hide protein sequence
MDSPDLQLPRSSQELPNAEWMYINTDASSNPWLPQTGVGALVQDKDLNIIFALSQFVDVGFSPPRLALWLRFHHICAESDCLEVVKLLSSHMEILGETEVLVADIRGLQM
SLGKVTLSHVHRDQNKVANCFGKICVVYEA