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Moc01g12980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g12980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr1:7902029..7902959
RNA-Seq ExpressionMoc01g12980
SyntenyMoc01g12980
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]8.6e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]8.6e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]8.6e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]8.6e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]8.6e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.1e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

A0A5A7TWB9 Gag/pol protein4.1e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

A0A5A7V4M1 Gag/pol protein4.1e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

A0A5D3CPJ6 Gag/pol protein4.1e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

A0A5D3DS88 Gag/pol protein4.1e-1857.61Show/hide
Query:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR
        KG + + A  AA K  K   A +G CFHCN +GHWKRNCPK L EKKKA +GKYDLL                DSGATNHVCS FQGISSWR
Subjt:  KGSKPDSAT-AAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYDLL----------------DSGATNHVCSFFQGISSWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCCTCGTGTCGCCCTGGGCGCGGCCTCCCTACGGAAGGGACAGGAAGGGGAGGCAAACGTTATCACCTCAAAAAGGTTCCACCGAGGTTCGCCCTTTGGAACC
AAGTTTGCATCCTCTTCTTCTGGAAGTAAGACTTTCAAGAAGAAGAAGGTTACTTTGTAAGGGGTCTAAACCTGACTCCGCTACTGCCGCTATCAAGAAAGGCAAAGCTA
AGGTTGCAAACAGAGGAAAATGTTTCCACTGCAACGTAGACGGTCATTGGAAGCGCAATTGCCCGAAAGACCTGGTCGAGAAGAAGAAAGCCAACAAAGGTAAATATGAT
TTACTTGATTCAGGAGCCACTAACCATGTTTGTTCTTTCTTTCAGGGAATTAGTTCTTGGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGCCTCGTGTCGCCCTGGGCGCGGCCTCCCTACGGAAGGGACAGGAAGGGGAGGCAAACGTTATCACCTCAAAAAGGTTCCACCGAGGTTCGCCCTTTGGAACC
AAGTTTGCATCCTCTTCTTCTGGAAGTAAGACTTTCAAGAAGAAGAAGGTTACTTTGTAAGGGGTCTAAACCTGACTCCGCTACTGCCGCTATCAAGAAAGGCAAAGCTA
AGGTTGCAAACAGAGGAAAATGTTTCCACTGCAACGTAGACGGTCATTGGAAGCGCAATTGCCCGAAAGACCTGGTCGAGAAGAAGAAAGCCAACAAAGGTAAATATGAT
TTACTTGATTCAGGAGCCACTAACCATGTTTGTTCTTTCTTTCAGGGAATTAGTTCTTGGAGATAG
Protein sequenceShow/hide protein sequence
MLGLVSPWARPPYGRDRKGRQTLSPQKGSTEVRPLEPSLHPLLLEVRLSRRRRLLCKGSKPDSATAAIKKGKAKVANRGKCFHCNVDGHWKRNCPKDLVEKKKANKGKYD
LLDSGATNHVCSFFQGISSWR