; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g13060 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g13060
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr1:7943041..7950267
RNA-Seq ExpressionMoc01g13060
SyntenyMoc01g13060
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066153.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]4.0e-0642.42Show/hide
Query:  KVVENRNDICLISDRHKDIISAIRNPANGWTD--AHHRYAIEIFTPWEARVIAHSVHKFDMNSGTF
        K V   +++CL+SDRH  IIS + N  NGWT+   HHRYA++    W AR   H V  +D +   F
Subjt:  KVVENRNDICLISDRHKDIISAIRNPANGWTD--AHHRYAIEIFTPWEARVIAHSVHKFDMNSGTF

XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]2.1e-1553.54Show/hide
Query:  NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYDCQELVGISWKAELHVMNYAGGSHLLIDKEVG
        +SQLNDLQLLHGNH+                         E  V+    RI G +E+SL LV +DYYDCQELVG+SWKAEL VMNYAGGS LL DKE G
Subjt:  NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYDCQELVGISWKAELHVMNYAGGSHLLIDKEVG

XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]1.5e-1353.68Show/hide
Query:  SVILHRNIVAVRLLNVNDLSFQSSIS-NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYD
        S I H  +  + +L   +L+  + +  +SQLNDLQLL GNH+GL+GRTT DKV A+ L+V EL+D  EII IT + RI G D +SLALVA+DYYD
Subjt:  SVILHRNIVAVRLLNVNDLSFQSSIS-NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYD

TrEMBL top hitse value%identityAlignment
A0A5A7VD99 Serine/threonine-protein phosphatase 7 long form-like protein2.0e-0642.42Show/hide
Query:  KVVENRNDICLISDRHKDIISAIRNPANGWTD--AHHRYAIEIFTPWEARVIAHSVHKFDMNSGTF
        K V   +++CL+SDRH  IIS + N  NGWT+   HHRYA++    W AR   H V  +D +   F
Subjt:  KVVENRNDICLISDRHKDIISAIRNPANGWTD--AHHRYAIEIFTPWEARVIAHSVHKFDMNSGTF

A0A6J1CQG9 (-)-germacrene D synthase-like1.0e-1553.54Show/hide
Query:  NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYDCQELVGISWKAELHVMNYAGGSHLLIDKEVG
        +SQLNDLQLLHGNH+                         E  V+    RI G +E+SL LV +DYYDCQELVG+SWKAEL VMNYAGGS LL DKE G
Subjt:  NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYDCQELVGISWKAELHVMNYAGGSHLLIDKEVG

A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein7.4e-1453.68Show/hide
Query:  SVILHRNIVAVRLLNVNDLSFQSSIS-NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYD
        S I H  +  + +L   +L+  + +  +SQLNDLQLL GNH+GL+GRTT DKV A+ L+V EL+D  EII IT + RI G D +SLALVA+DYYD
Subjt:  SVILHRNIVAVRLLNVNDLSFQSSIS-NSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCCGAGGTCGACCTCATCGAACCCGACACATCCGACCTCAAATCCGACCGAGGTAACCACCTGTTGTAACCCCCTGTCGGAACCTAAACCTATAAATAGAGGGCC
TCATTTCACCATCAGGTCTTCCTTTCACGTTTTGGGTTGGAGCAAGGACCGGGTTCGAGCTAGATCAACGTTGTGCAAATGCTTGCATAAACATTTGGCGCCGTCTATTG
GAGCAACATTGCAAGTCATCCCGGCGATTAAACACGAGCTGGACGCCAAAGCCACCGAAGATCAGACCAGAGCTGGGCAAGATGTGGAGCCACCTCGGAGGTCCACCCGG
CAATGCAAATGTCGTCCTGCCTTCGGCACATCCGAGGCCCAGCAAGACCAACCGAGGTCGAGTCCAGTGTGCACCATGGAGGAGATGTATAATGAGATGACGCGGGCGAA
TCGAACTGGATCCCACTCAAAGGCTCCAGGCGGAGATTCGCATAAAGTGGTAGAGAATAGGAATGACATATGCTTGATTTCTGATAGACACAAGGACATTATATCTGCCA
TAAGGAATCCTGCAAATGGATGGACAGATGCACATCACAGGTATGCCATTGAAATATTTACTCCTTGGGAAGCACGTGTCATTGCACACAGTGTGCATAAGTTTGATATG
AATAGTGGAACATTTGATGATGTCGCCATCCAATTTGGACTACATATAGACGAGAAAGCTCTTGTTGAGAGTGATTGGCCTCCTCGAGTCGCATTGGCCCTTGATATTTA
TCCCCAAGACCTCAATACTCCTCTACAGAAGCTTGACGTTCGGCCTTGCCATTTATTCCCAAGGCCAGAACTGTGCACCGGTCCTTGCCGTTTATCCCCAAGGTCAGAAC
CCATAGTTAACGGACTATCAACCCGTCCCTTTACCCTTCACCCTTCATCACTTCACTATCCCTCCTATGACCACCTACAGGTAATGATCTTTTTAGTCTTAGCTCTGCGA
AGTGTCATTCTTCACAGGAATATTGTTGCAGTCCGCTTATTGAATGTAAATGACCTCTCCTTTCAATCTTCAATTTCAAATTCTCAGTTGAATGACCTACAGCTCCTGCA
TGGTAACCACAACGGACTTTCGGGTCGTACCACTTTAGATAAGGTGGCTGCAATGGTTCTACAGGTACCAGAGCTAGTAGATGACTTTGAAATAATTGTGATAACAGCTC
GGTATAGGATATTTGGATTGGATGAAAACTCTCTTGCTTTAGTTGCCGCCGACTATTATGATTGTCAGGAGCTCGTTGGCATTTCTTGGAAAGCTGAGCTTCATGTGATG
AATTATGCTGGGGGAAGTCATCTGTTGATTGACAAAGAGGTGGGTCCATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCCGAGGTCGACCTCATCGAACCCGACACATCCGACCTCAAATCCGACCGAGGTAACCACCTGTTGTAACCCCCTGTCGGAACCTAAACCTATAAATAGAGGGCC
TCATTTCACCATCAGGTCTTCCTTTCACGTTTTGGGTTGGAGCAAGGACCGGGTTCGAGCTAGATCAACGTTGTGCAAATGCTTGCATAAACATTTGGCGCCGTCTATTG
GAGCAACATTGCAAGTCATCCCGGCGATTAAACACGAGCTGGACGCCAAAGCCACCGAAGATCAGACCAGAGCTGGGCAAGATGTGGAGCCACCTCGGAGGTCCACCCGG
CAATGCAAATGTCGTCCTGCCTTCGGCACATCCGAGGCCCAGCAAGACCAACCGAGGTCGAGTCCAGTGTGCACCATGGAGGAGATGTATAATGAGATGACGCGGGCGAA
TCGAACTGGATCCCACTCAAAGGCTCCAGGCGGAGATTCGCATAAAGTGGTAGAGAATAGGAATGACATATGCTTGATTTCTGATAGACACAAGGACATTATATCTGCCA
TAAGGAATCCTGCAAATGGATGGACAGATGCACATCACAGGTATGCCATTGAAATATTTACTCCTTGGGAAGCACGTGTCATTGCACACAGTGTGCATAAGTTTGATATG
AATAGTGGAACATTTGATGATGTCGCCATCCAATTTGGACTACATATAGACGAGAAAGCTCTTGTTGAGAGTGATTGGCCTCCTCGAGTCGCATTGGCCCTTGATATTTA
TCCCCAAGACCTCAATACTCCTCTACAGAAGCTTGACGTTCGGCCTTGCCATTTATTCCCAAGGCCAGAACTGTGCACCGGTCCTTGCCGTTTATCCCCAAGGTCAGAAC
CCATAGTTAACGGACTATCAACCCGTCCCTTTACCCTTCACCCTTCATCACTTCACTATCCCTCCTATGACCACCTACAGGTAATGATCTTTTTAGTCTTAGCTCTGCGA
AGTGTCATTCTTCACAGGAATATTGTTGCAGTCCGCTTATTGAATGTAAATGACCTCTCCTTTCAATCTTCAATTTCAAATTCTCAGTTGAATGACCTACAGCTCCTGCA
TGGTAACCACAACGGACTTTCGGGTCGTACCACTTTAGATAAGGTGGCTGCAATGGTTCTACAGGTACCAGAGCTAGTAGATGACTTTGAAATAATTGTGATAACAGCTC
GGTATAGGATATTTGGATTGGATGAAAACTCTCTTGCTTTAGTTGCCGCCGACTATTATGATTGTCAGGAGCTCGTTGGCATTTCTTGGAAAGCTGAGCTTCATGTGATG
AATTATGCTGGGGGAAGTCATCTGTTGATTGACAAAGAGGTGGGTCCATCTTAA
Protein sequenceShow/hide protein sequence
MCPRSTSSNPTHPTSNPTEVTTCCNPLSEPKPINRGPHFTIRSSFHVLGWSKDRVRARSTLCKCLHKHLAPSIGATLQVIPAIKHELDAKATEDQTRAGQDVEPPRRSTR
QCKCRPAFGTSEAQQDQPRSSPVCTMEEMYNEMTRANRTGSHSKAPGGDSHKVVENRNDICLISDRHKDIISAIRNPANGWTDAHHRYAIEIFTPWEARVIAHSVHKFDM
NSGTFDDVAIQFGLHIDEKALVESDWPPRVALALDIYPQDLNTPLQKLDVRPCHLFPRPELCTGPCRLSPRSEPIVNGLSTRPFTLHPSSLHYPSYDHLQVMIFLVLALR
SVILHRNIVAVRLLNVNDLSFQSSISNSQLNDLQLLHGNHNGLSGRTTLDKVAAMVLQVPELVDDFEIIVITARYRIFGLDENSLALVAADYYDCQELVGISWKAELHVM
NYAGGSHLLIDKEVGPS