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Moc01g13080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g13080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr1:7961023..7964487
RNA-Seq ExpressionMoc01g13080
SyntenyMoc01g13080
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7027274.1 unnamed protein product [Microthlaspi erraticum]2.3e-1045.68Show/hide
Query:  YSQLISTRATSHSPLLGGPPTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        + +++S RA     +   PPT+GW K+N DG++ GNPG A+A G++RD NG+W+ GF  N+G  ++  AELWGV+ GL +A
Subjt:  YSQLISTRATSHSPLLGGPPTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

KAF7805417.1 reverse transcriptase [Senna tora]1.7e-1055.56Show/hide
Query:  PPTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        PP +GW KLN DGS LGNPG  +A G+IRD NG W+ GF   LG G S+  ELW +  G+K+A
Subjt:  PPTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

KAF7830841.1 reverse transcriptase [Senna tora]3.5e-1158.73Show/hide
Query:  PPTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        PP +GW KLN DGS LGNPG  +A G+IRD NG WI GF   LG G S+ AELW +  G+K+A
Subjt:  PPTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

KAF7832197.1 reverse transcriptase [Senna tora]2.7e-1146.24Show/hide
Query:  ISSTYSQLISTRATSHSPLLGG--------PPTNG-WKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        I+ T S   S  A  + P+L          PPT G WKLN DGS LGNPG  +A G+IRD NG W+ GF  +LG G S  AE+W +  G+K+A
Subjt:  ISSTYSQLISTRATSHSPLLGG--------PPTNG-WKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

XP_022137804.1 uncharacterized protein LOC111009151 [Momordica charantia]1.5e-1755.91Show/hide
Query:  SILSLNQSPWLLIGDFNAIASLTKR---------------------------LFGPKFTWKGPLIAGFDRVFERLDQALANSHWQLAFPDTSI
        S++  NQSPWLLIGDFN IAS  ++                             GPKFTWKGPLIAGFDRVFERLD+ALANSHWQLAF DTS+
Subjt:  SILSLNQSPWLLIGDFNAIASLTKR---------------------------LFGPKFTWKGPLIAGFDRVFERLDQALANSHWQLAFPDTSI

TrEMBL top hitse value%identityAlignment
A0A2N9FBK8 Uncharacterized protein2.0e-1262.9Show/hide
Query:  PPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        PPT   KLN DGS LGNPGPAS+ GL+RD NG WI GF H LG   S+ AELWG+  GL +A
Subjt:  PPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

A0A2N9FPT3 RNase H domain-containing protein2.0e-1262.9Show/hide
Query:  PPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        PPT   KLN DGS LGNPGPAS+ GL+RD NG WI GF H LG   S+ AELWG+  GL +A
Subjt:  PPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

A0A2N9FQ21 Uncharacterized protein2.0e-1262.9Show/hide
Query:  PPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        PPT   KLN DGS LGNPGPAS+ GL+RD NG WI GF H LG   S+ AELWG+  GL +A
Subjt:  PPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

A0A2N9GAC7 RNase H domain-containing protein1.2e-1250.54Show/hide
Query:  ALDEDYSISSTYSQLISTRATSHSPLLG--GPPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        A++  +SIS   +Q+     T  + L+G   PP+   KLN DGS LGNPG ASA GL+RD NG+WI GF HNLG   S+ AELWG+  GL +A
Subjt:  ALDEDYSISSTYSQLISTRATSHSPLLG--GPPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

A0A6J1C8B2 uncharacterized protein LOC1110091517.1e-1855.91Show/hide
Query:  SILSLNQSPWLLIGDFNAIASLTKR---------------------------LFGPKFTWKGPLIAGFDRVFERLDQALANSHWQLAFPDTSI
        S++  NQSPWLLIGDFN IAS  ++                             GPKFTWKGPLIAGFDRVFERLD+ALANSHWQLAF DTS+
Subjt:  SILSLNQSPWLLIGDFNAIASLTKR---------------------------LFGPKFTWKGPLIAGFDRVFERLDQALANSHWQLAFPDTSI

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.5e-0951.61Show/hide
Query:  PTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        P  GW K+N DG++ GNPG ASA G++RD  G W  GF  N+G  ++  AELWGV+ GL  A
Subjt:  PTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA

Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-1051.61Show/hide
Query:  PTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA
        P  GW K+N DG++ GNPG ASA G++RD  G W  GF  N+G  ++  AELWGV+ GL  A
Subjt:  PTNGW-KLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCTTGTTCAAGACCCGGGATCAGCCCTTAAGGGAGCAATCTCTATACTATCCCTAAATCAGAGTCCTTGGCTTTTGATTGGAGACTTTAATGCCATTGCT
TCGTTGACGAAAAGGCTGTTTGGGCCTAAGTTTACTTGGAAGGGTCCTTTGATTGCTGGGTTTGACCGTGTCTTCGAACGACTTGACCAAGCTTTGGCTAATTCG
CATTGGCAGTTGGCCTTTCCTGATACGTCAATAATATCCTCCATCAGGAAGAGCTATCTTGGATTCAGCGTGCTCTTTGTGATTGGGTTCGTTTTGGAGATCATA
ATACTACCTACTTTCATACGAGGGCTATTATCATGCGGAAAATGTGTTCGAATTGACGTTCTTAAGGGGCCAAATGATGAATGGATATCTGATGTTATACGGTTG
AAAGTCGAAAGGGATTTAACTCGTGTTTTGTCGAGTGGGGAAGTCCGGAAGGCCATTTTCGCTATGGGTGTTTTCAAATCTCCTGGGCCCGATGATTTGTTGGAC
CCTCCGATTATTGACCGCATAGCTAGTATTTGTCCTCCTTCTGCCTCTACAAGAACTAATGATTCTCTTGTTTGGCTTGGGGCCTTGGATGAAGATTATTCGATT
TCTTCGACCTATTCCCAGCTCATTTCTACCAGAGCAACGAGCCATTCCCCGCTGCTGGGAGGCCCCCCGACTAATGGTTGGAAGCTTAATATTGATGGATCCGCT
CTTGGGAATCCAGGCCCTGCTAGTGCATACGGCCTCATTCGAGATCTAAATGGACAGTGGATAGTGGGTTTTGTGCATAATCTAGGTCATGGTACATCGATTACA
GCCGAATTGTGGGGTGTCTTTTCTGGTTTGAAGATTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCCTTGTTCAAGACCCGGGATCAGCCCTTAAGGGAGCAATCTCTATACTATCCCTAAATCAGAGTCCTTGGCTTTTGATTGGAGACTTTAATGCCATTGCT
TCGTTGACGAAAAGGCTGTTTGGGCCTAAGTTTACTTGGAAGGGTCCTTTGATTGCTGGGTTTGACCGTGTCTTCGAACGACTTGACCAAGCTTTGGCTAATTCG
CATTGGCAGTTGGCCTTTCCTGATACGTCAATAATATCCTCCATCAGGAAGAGCTATCTTGGATTCAGCGTGCTCTTTGTGATTGGGTTCGTTTTGGAGATCATA
ATACTACCTACTTTCATACGAGGGCTATTATCATGCGGAAAATGTGTTCGAATTGACGTTCTTAAGGGGCCAAATGATGAATGGATATCTGATGTTATACGGTTG
AAAGTCGAAAGGGATTTAACTCGTGTTTTGTCGAGTGGGGAAGTCCGGAAGGCCATTTTCGCTATGGGTGTTTTCAAATCTCCTGGGCCCGATGATTTGTTGGAC
CCTCCGATTATTGACCGCATAGCTAGTATTTGTCCTCCTTCTGCCTCTACAAGAACTAATGATTCTCTTGTTTGGCTTGGGGCCTTGGATGAAGATTATTCGATT
TCTTCGACCTATTCCCAGCTCATTTCTACCAGAGCAACGAGCCATTCCCCGCTGCTGGGAGGCCCCCCGACTAATGGTTGGAAGCTTAATATTGATGGATCCGCT
CTTGGGAATCCAGGCCCTGCTAGTGCATACGGCCTCATTCGAGATCTAAATGGACAGTGGATAGTGGGTTTTGTGCATAATCTAGGTCATGGTACATCGATTACA
GCCGAATTGTGGGGTGTCTTTTCTGGTTTGAAGATTGCCTAG
Protein sequenceShow/hide protein sequence
MPLVQDPGSALKGAISILSLNQSPWLLIGDFNAIASLTKRLFGPKFTWKGPLIAGFDRVFERLDQALANSHWQLAFPDTSIISSIRKSYLGFSVLFVIGFVLEII
ILPTFIRGLLSCGKCVRIDVLKGPNDEWISDVIRLKVERDLTRVLSSGEVRKAIFAMGVFKSPGPDDLLDPPIIDRIASICPPSASTRTNDSLVWLGALDEDYSI
SSTYSQLISTRATSHSPLLGGPPTNGWKLNIDGSALGNPGPASAYGLIRDLNGQWIVGFVHNLGHGTSITAELWGVFSGLKIA