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Moc01g14010 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g14010
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationchr1:8701077..8701737
RNA-Seq ExpressionMoc01g14010
SyntenyMoc01g14010
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR021099 - Plant organelle RNA recognition domain
IPR045040 - PORR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVX09660.1 Protein WHAT'S THIS FACTOR 1-like [Vitis vinifera]8.1e-1353.41Show/hide
Query:  LNTPPLASSQSNSSRIGKSYSASPSPFFDSSGDHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYENKHSAKIKR
        +N PP ASS    S  G+S+  SPS FF S     E SIHQ HE+D VERLC++LMMMKT  +PLQSL PL+WDLG  ++ H   I +
Subjt:  LNTPPLASSQSNSSRIGKSYSASPSPFFDSSGDHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYENKHSAKIKR
XP_022156041.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]7.3e-1495.45Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        DHQESSIHQVHESD VERLCRMLMMMKTRALPL SLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
XP_023522997.1 protein WHAT'S THIS FACTOR 1-like, partial [Cucurbita pepo subsp. pepo]1.1e-1288.64Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        D QESSIHQ+HESD VERLCR+LMMMKTRA+PLQSLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
XP_023543562.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]1.1e-1288.64Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        D QESSIHQ+HESD VERLCR+LMMMKTRA+PLQSLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
XP_023543563.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]1.1e-1288.64Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        D QESSIHQ+HESD VERLCR+LMMMKTRA+PLQSLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
TrEMBL top hitse value%identityAlignment
A0A438JL30 Protein WHAT'S THIS FACTOR 1-like3.9e-1353.41Show/hide
Query:  LNTPPLASSQSNSSRIGKSYSASPSPFFDSSGDHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYENKHSAKIKR
        +N PP ASS    S  G+S+  SPS FF S     E SIHQ HE+D VERLC++LMMMKT  +PLQSL PL+WDLG  ++ H   I +
Subjt:  LNTPPLASSQSNSSRIGKSYSASPSPFFDSSGDHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYENKHSAKIKR
A0A5D3DR92 Protein ROOT PRIMORDIUM DEFECTIVE 15.7e-1286.36Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        D +ESSIHQ HESD VERLCR+LMMMKTR LPLQSLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
A0A6J1DTM9 protein ROOT PRIMORDIUM DEFECTIVE 13.5e-1495.45Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        DHQESSIHQVHESD VERLCRMLMMMKTRALPL SLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
A0A6J1EL68 protein WHAT'S THIS FACTOR 1 homolog4.3e-1284.09Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        D Q+SSIHQ+HESD VERLCR+LMMMK RA+PLQSLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
A0A6J1ES37 protein WHAT'S THIS FACTOR 1 homolog4.3e-1284.09Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        D Q+SSIHQ+HESD VERLCR+LMMMK RA+PLQSLRPLEWDLG
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein1.3e-0856.25Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYEN
        D QE  IHQ HE+D VERLCR+LMMM+++ + L+SL  L++DLG  +N
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYEN
AT3G58520.2 Ubiquitin carboxyl-terminal hydrolase family protein1.3e-0856.25Show/hide
Query:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYEN
        D QE  IHQ HE+D VERLCR+LMMM+++ + L+SL  L++DLG  +N
Subjt:  DHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYEN
AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein5.6e-0441.86Show/hide
Query:  HQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG
        ++E  + +V+E D++ RLC++LM+   R L L S+  L WDLG
Subjt:  HQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTAAACACTCCTCCACTAGCTTCATCACAGTCAAATTCATCGCGGATTGGCAAAAGCTACTCGGCCTCACCATCCCCGTTCTTCGATTCATCCGGAGATCACCA
AGAGAGTAGTATACACCAAGTTCACGAGAGCGATATTGTCGAAAGGCTCTGTAGAATGCTTATGATGATGAAAACTAGGGCTCTTCCACTTCAGTCGTTGCGTCCTTTGG
AGTGGGATCTAGGTCGGTATGAGAACAAGCATAGCGCAAAAATCAAGCGGGTAGAGGCAAAGGCATCCTTAGAGAAGTCTAAGGCTGAGATCAGCTCGACCTTGGCTGAA
GTGGAGCTTTTGCGAGTGGAATTGGAACGTTGTCAAGTAGAGAGGATTGTTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTAAACACTCCTCCACTAGCTTCATCACAGTCAAATTCATCGCGGATTGGCAAAAGCTACTCGGCCTCACCATCCCCGTTCTTCGATTCATCCGGAGATCACCA
AGAGAGTAGTATACACCAAGTTCACGAGAGCGATATTGTCGAAAGGCTCTGTAGAATGCTTATGATGATGAAAACTAGGGCTCTTCCACTTCAGTCGTTGCGTCCTTTGG
AGTGGGATCTAGGTCGGTATGAGAACAAGCATAGCGCAAAAATCAAGCGGGTAGAGGCAAAGGCATCCTTAGAGAAGTCTAAGGCTGAGATCAGCTCGACCTTGGCTGAA
GTGGAGCTTTTGCGAGTGGAATTGGAACGTTGTCAAGTAGAGAGGATTGTTGAGTGA
Protein sequenceShow/hide protein sequence
MPLNTPPLASSQSNSSRIGKSYSASPSPFFDSSGDHQESSIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGRYENKHSAKIKRVEAKASLEKSKAEISSTLAE
VELLRVELERCQVERIVE