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Moc01g14970 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g14970
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr1:9346189..9348213
RNA-Seq ExpressionMoc01g14970
SyntenyMoc01g14970
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-2063.75Show/hide
Query:  GRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP
        G SN+AADALSRK EHA +C+LAHL+ S++ GSV + ++  L+ D AAQ ++ LAK GKT QFWVE+DLL+TKGNRLYVP
Subjt:  GRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP

KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-4162.41Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD  ++ K  KSTMVDSGATHNF+TE +A+RLNL+W+KD  +MKAVNSA LPI+G+ KR+ +++  WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLV+T S P+VV T ++Q +G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

KAA0062340.1 polyprotein [Cucumis melo var. makuwa]2.4e-4160.99Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD+ ++ K  KSTMVDSG THNF+TE +A+RLNL+W+KD  +MKAVNSA LPI+G+ KR  +++  WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PL KCLV+TR  P+VV T ++Q +G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

KAA0062340.1 polyprotein [Cucumis melo var. makuwa]1.1e-1757.5Show/hide
Query:  GRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP
        G SN+  DALSR  EHA +C+LAHL+ S++ GSV + ++  L+ D  AQ ++ L K GKT QFWVE+DLL+TKGNRLYVP
Subjt:  GRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP

KAA0066677.1 uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa]1.8e-4162.41Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD   + K  KSTMVDSGATHNF+TE +A+RLNL+W+KD  +MKAVNSA LPI+G+ KR  +++E WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLV+T   P+VV T ++Q +G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]2.4e-4976.6Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M V+  V+ K AKSTMVDSGATHNFMTET+ARRLNL WDKDP KMKAVNSA LPI+G+AKRV +K+ TWS  VDFVIVRMDDFDVVLG++FLLEHKVIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLVVT SDP VV TSIKQ +GVKMISAL  +   A D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.7e-2374.07Show/hide
Query:  PGRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP
        PGR+N+AADALSRKSE A LCMLAHLKASKLTGS+ EAI+ +L++DPAAQ IIQLA +G T QF VE+DL  TKGN LYVP
Subjt:  PGRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]8.1e-4262.41Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD  ++ K  KSTMVDSGATHNF+TE +A+RLNL+W+KD E+MKAVNSA LPI+G+ KR  +++  WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLV+T   P+VV T ++Q +G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

TrEMBL top hitse value%identityAlignment
A0A5A7T3M3 Reverse transcriptase1.9e-2063.75Show/hide
Query:  GRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP
        G SN+AADALSRK EHA +C+LAHL+ S++ GSV + ++  L+ D AAQ ++ LAK GKT QFWVE+DLL+TKGNRLYVP
Subjt:  GRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP

A0A5A7T3M3 Reverse transcriptase5.1e-4262.41Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD  ++ K  KSTMVDSGATHNF+TE +A+RLNL+W+KD  +MKAVNSA LPI+G+ KR+ +++  WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLV+T S P+VV T ++Q +G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

A0A5A7VHT2 Reverse transcriptase domain-containing protein8.7e-4262.41Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD   + K  KSTMVDSGATHNF+TE +A+RLNL+W+KD  +MKAVNSA LPI+G+ KR  +++E WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLV+T   P+VV T ++Q +G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

A0A5D3DVV7 Retrotrans_gag domain-containing protein1.1e-4161.7Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD  ++ K  KSTMVDSGATHNF+TE +A+RLNL W+KD  +MKAVNSA LPI+G+ KR  +++  WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        P AKCLV+T S P++V T ++QL+G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

A0A6J1DLQ6 uncharacterized protein LOC1110223201.1e-4976.6Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M V+  V+ K AKSTMVDSGATHNFMTET+ARRLNL WDKDP KMKAVNSA LPI+G+AKRV +K+ TWS  VDFVIVRMDDFDVVLG++FLLEHKVIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLVVT SDP VV TSIKQ +GVKMISAL  +   A D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

A0A6J1DLQ6 uncharacterized protein LOC1110223208.2e-2474.07Show/hide
Query:  PGRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP
        PGR+N+AADALSRKSE A LCMLAHLKASKLTGS+ EAI+ +L++DPAAQ IIQLA +G T QF VE+DL  TKGN LYVP
Subjt:  PGRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP

A0A6J1DLQ6 uncharacterized protein LOC1110223203.9e-4262.41Show/hide
Query:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM
        M VD  ++ K  KSTMVDSGATHNF+TE +A+RLNL+W+KD E+MKAVNSA LPI+G+ KR  +++  WS  VDFV+V+MDDFDVVLGMEFLLEH+VIPM
Subjt:  MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPM

Query:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD
        PLAKCLV+T   P+VV T ++Q +G+KMISA+  +   + D
Subjt:  PLAKCLVVTRSDPTVVPTSIKQLNGVKMISALPGRSNKAAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTGGACGTGTTGGTTCATGGTAAAGTTGCTAAGAGTACTATGGTGGACTCTGGAGCCACACACAACTTCATGACTGAAACCAAGGCTCGCCGTCTGAATTTACA
ATGGGATAAAGATCCAGAGAAGATGAAAGCAGTTAACTCCGCAACCCTCCCTATCGTGGGGATAGCAAAGAGAGTCCAACTGAAGATCGAGACATGGAGCGACAAAGTGG
ATTTTGTAATTGTTAGAATGGATGACTTCGACGTCGTGCTGGGAATGGAATTCCTTCTAGAGCATAAAGTCATCCCCATGCCCCTAGCAAAGTGTCTAGTTGTTACTAGA
TCTGATCCCACCGTTGTTCCGACGAGTATAAAACAACTAAATGGGGTTAAGATGATATCAGCTTTGCCTGGTCGGTCAAACAAAGCAGCGGATGCCCTTAGTCGAAAGAG
CGAACATGCGACCCTGTGCATGTTAGCTCATCTGAAAGCAAGCAAGTTGACGGGATCCGTGGGTGAAGCCATCAAGGCGCACCTGAAAGACGATCCAGCAGCACAGACAA
TCATTCAGCTAGCAAAGGACGGGAAGACCAGCCAGTTTTGGGTCGAAGACGACCTCCTTTTAACCAAAGGGAATCGTCTCTATGTCCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTGGACGTGTTGGTTCATGGTAAAGTTGCTAAGAGTACTATGGTGGACTCTGGAGCCACACACAACTTCATGACTGAAACCAAGGCTCGCCGTCTGAATTTACA
ATGGGATAAAGATCCAGAGAAGATGAAAGCAGTTAACTCCGCAACCCTCCCTATCGTGGGGATAGCAAAGAGAGTCCAACTGAAGATCGAGACATGGAGCGACAAAGTGG
ATTTTGTAATTGTTAGAATGGATGACTTCGACGTCGTGCTGGGAATGGAATTCCTTCTAGAGCATAAAGTCATCCCCATGCCCCTAGCAAAGTGTCTAGTTGTTACTAGA
TCTGATCCCACCGTTGTTCCGACGAGTATAAAACAACTAAATGGGGTTAAGATGATATCAGCTTTGCCTGGTCGGTCAAACAAAGCAGCGGATGCCCTTAGTCGAAAGAG
CGAACATGCGACCCTGTGCATGTTAGCTCATCTGAAAGCAAGCAAGTTGACGGGATCCGTGGGTGAAGCCATCAAGGCGCACCTGAAAGACGATCCAGCAGCACAGACAA
TCATTCAGCTAGCAAAGGACGGGAAGACCAGCCAGTTTTGGGTCGAAGACGACCTCCTTTTAACCAAAGGGAATCGTCTCTATGTCCCGTGA
Protein sequenceShow/hide protein sequence
MCVDVLVHGKVAKSTMVDSGATHNFMTETKARRLNLQWDKDPEKMKAVNSATLPIVGIAKRVQLKIETWSDKVDFVIVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVVTR
SDPTVVPTSIKQLNGVKMISALPGRSNKAADALSRKSEHATLCMLAHLKASKLTGSVGEAIKAHLKDDPAAQTIIQLAKDGKTSQFWVEDDLLLTKGNRLYVP