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Moc01g15070 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g15070
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr1:9482985..9483917
RNA-Seq ExpressionMoc01g15070
SyntenyMoc01g15070
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.2e-2761.7Show/hide
Query:  DGHKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        +GHKSYQC QRK    ++ TPQANL E D  I+  ++EAN++ENK++WILDTGASRH C+NREL HD++D+  G+CVFMGNS T GV+GKGK++
Subjt:  DGHKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

TYK12176.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]7.2e-2864.13Show/hide
Query:  HKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        HKSYQC QRK    ++ TPQANL E D  I+V ++EAN++ENK++WILDTGASRH C+NREL HD++D+  G+CVFMGNSTT GV+GKGK++
Subjt:  HKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

XP_016471390.1 PREDICTED: uncharacterized protein LOC107793528 [Nicotiana tabacum]9.4e-2864.21Show/hide
Query:  HKSYQCIQR------KDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        HK +QC QR      K  +  PQANLTE+ D+I VV++EAN+V NK++WILDTGASRHLC+N+ELFHDF++ST G+CV+MGNSTT GV+GKGK+L
Subjt:  HKSYQCIQR------KDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]3.3e-3377.17Show/hide
Query:  HKSYQCIQRKDK---RRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        HKSYQC Q+KD+   R TPQANLTETDDII  VV+E N+VENKS+WILDTGASRH CSNR+LFHDFQDS  G+CVFMGNS T GVLGKGK+L
Subjt:  HKSYQCIQRKDK---RRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

XP_022157709.1 uncharacterized protein LOC111024362 [Momordica charantia]9.4e-2871.11Show/hide
Query:  GHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        G K  +   R+DKR TPQANL ETDDII  +V++AN+VE K +WILDT ASRH CSNRE+FHDFQDST G+CVFMGN TT GVLGKGKIL
Subjt:  GHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

TrEMBL top hitse value%identityAlignment
A0A1S4A453 uncharacterized protein LOC1077935284.5e-2864.21Show/hide
Query:  HKSYQCIQR------KDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        HK +QC QR      K  +  PQANLTE+ D+I VV++EAN+V NK++WILDTGASRHLC+N+ELFHDF++ST G+CV+MGNSTT GV+GKGK+L
Subjt:  HKSYQCIQR------KDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

A0A5D3CP43 Ty1-copia retrotransposon protein3.5e-2864.13Show/hide
Query:  HKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        HKSYQC QRK    ++ TPQANL E D  I+V ++EAN++ENK++WILDTGASRH C+NREL HD++D+  G+CVFMGNSTT GV+GKGK++
Subjt:  HKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

A0A5D3DJE2 Ty1-copia retrotransposon protein5.9e-2861.7Show/hide
Query:  DGHKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        +GHKSYQC QRK    ++ TPQANL E D  I+  ++EAN++ENK++WILDTGASRH C+NREL HD++D+  G+CVFMGNS T GV+GKGK++
Subjt:  DGHKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

A0A6J1DHJ4 uncharacterized protein LOC1110211471.6e-3377.17Show/hide
Query:  HKSYQCIQRKDK---RRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        HKSYQC Q+KD+   R TPQANLTETDDII  VV+E N+VENKS+WILDTGASRH CSNR+LFHDFQDS  G+CVFMGNS T GVLGKGK+L
Subjt:  HKSYQCIQRKDK---RRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

A0A6J1DXB7 uncharacterized protein LOC1110243624.5e-2871.11Show/hide
Query:  GHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL
        G K  +   R+DKR TPQANL ETDDII  +V++AN+VE K +WILDT ASRH CSNRE+FHDFQDST G+CVFMGN TT GVLGKGKIL
Subjt:  GHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCTGATTCTGGAACGTCCACTGTTGCTATCGATGGACACAAATCCTATCAATGCATCCAGAGAAAAGACAAACGGCGTACTCCACAAGCGAATCTCACAGAGAC
AGATGATATCATTGTCGTCGTGGTCATTGAGGCAAATGTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCTAGACACTTATGCTCAAACCGTGAGCTCT
TCCACGACTTCCAGGACTCCACCAAGGGCAAATGTGTCTTTATGGGGAACTCTACCACAACTGGAGTACTTGGGAAAGGGAAGATACTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGCTGATTCTGGAACGTCCACTGTTGCTATCGATGGACACAAATCCTATCAATGCATCCAGAGAAAAGACAAACGGCGTACTCCACAAGCGAATCTCACAGAGAC
AGATGATATCATTGTCGTCGTGGTCATTGAGGCAAATGTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCTAGACACTTATGCTCAAACCGTGAGCTCT
TCCACGACTTCCAGGACTCCACCAAGGGCAAATGTGTCTTTATGGGGAACTCTACCACAACTGGAGTACTTGGGAAAGGGAAGATACTCTAA
Protein sequenceShow/hide protein sequence
MTADSGTSTVAIDGHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL