; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g15090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g15090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:9497490..9499424
RNA-Seq ExpressionMoc01g15090
SyntenyMoc01g15090
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]6.8e-5961.43Show/hide
Query:  GGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLS
        GGLP KTDPVGQ+APSN+K                                                            KM AYVQNDKLLIHCFQDSLS
Subjt:  GGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLS

Query:  CPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNL
         P SRWYMQLD+SHVGSWKNL DSFLKQY+ N+DMA DRLDLQRMEKKS  SFKEYAQRWRDTAAQVQPPLTDKELS +FINTLK  FYDRM+GSASTN 
Subjt:  CPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNL

Query:  SDIMTIGERI
        SDIM IGERI
Subjt:  SDIMTIGERI

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.5e-8265Show/hide
Query:  MPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQSAPSNKK-------------------------------
        MPQ+TTYNPLYDVPVGQY HP V+GAQQIP NIIFREPEQMM  P VLN+G L  KTDPVGQ+APSN+K                               
Subjt:  MPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQSAPSNKK-------------------------------

Query:  -----------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSK
                                     KM AYVQNDKLLIHCFQDSLS P SRWYMQLD+SHVGSWKNL DSFLKQY+ N+DMA DRLDLQRMEKKS 
Subjt:  -----------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSK

Query:  RSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI
        +SFKEYAQRWRDTAAQVQPPL DKELS++FINTLK  FYDRMIGSASTN SDIMTIGERI
Subjt:  RSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]6.2e-7653.77Show/hide
Query:  GKTATHSATSNNLVHEPQETPPYPPGY-------GPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPV
        GKT    A ++N +HEP  TP +PPG+       GP  R +TEGFM Q+TTYNPLYD+P GQ+P PLV G  Q PA IIF+EPEQ++  P VLN+GG   
Subjt:  GKTATHSATSNNLVHEPQETPPYPPGY-------GPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPV

Query:  KTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSR
          DP  Q APS++K                                                            KM AY+QNDKLLIHCFQDSLS P S 
Subjt:  KTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSR

Query:  WYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMT
        WYM LD+ HV SWKNL DSFLKQY+ N+DM  DRLDLQ MEKK+  SFKEY QRWRDTAAQ QPP TDKELSS+FINTLK  FYDRMIGSAST+ SDI+T
Subjt:  WYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMT

Query:  IGERI
        IGERI
Subjt:  IGERI

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.4e-9663.76Show/hide
Query:  GKTATHSATSNNLVHEPQETPPYPPGYGPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQ
        GK     ATS+N +HEPQETPPYPPGYGPPLR V EGFMPQ+TTYNPLYDVP+GQYPH  V+GAQQIP NIIFREPEQMM  P V N+GG P KTDPV Q
Subjt:  GKTATHSATSNNLVHEPQETPPYPPGYGPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQ

Query:  SAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDN
        +A S +K                                                            KM AYVQN KLLIHCFQDSL    SRWYMQLD+
Subjt:  SAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDN

Query:  SHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI
        SHVGSWKNL DSFLKQY+ N+DMA DRLDLQRMEK S  SFKEYAQRWRDTAAQVQPPLTDKELS++FINTLK  FYDRMIGSASTN SDIMTIGERI
Subjt:  SHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.8e-6060.91Show/hide
Query:  MMPLPMVLNIGGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKL
        MM  P VLN+GGLP KTD VGQ+APSN+K                                                            KM AYVQNDKL
Subjt:  MMPLPMVLNIGGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKL

Query:  LIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYD
        LIHCFQDSLS P SRWYMQLD+S+VGSWKNL DSFLKQY+ N+DMA DRLDLQRMEKKS  SFKEYAQRWRDTAAQVQPPLTDKELS++FINTLK  FYD
Subjt:  LIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYD

Query:  RMIGSASTNLSDIMTIGERI
        RMIG+ASTN SDIMTIGERI
Subjt:  RMIGSASTNLSDIMTIGERI

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H3.3e-5961.43Show/hide
Query:  GGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLS
        GGLP KTDPVGQ+APSN+K                                                            KM AYVQNDKLLIHCFQDSLS
Subjt:  GGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLS

Query:  CPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNL
         P SRWYMQLD+SHVGSWKNL DSFLKQY+ N+DMA DRLDLQRMEKKS  SFKEYAQRWRDTAAQVQPPLTDKELS +FINTLK  FYDRM+GSASTN 
Subjt:  CPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNL

Query:  SDIMTIGERI
        SDIM IGERI
Subjt:  SDIMTIGERI

A0A6J1D099 Ribonuclease H7.3e-8365Show/hide
Query:  MPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQSAPSNKK-------------------------------
        MPQ+TTYNPLYDVPVGQY HP V+GAQQIP NIIFREPEQMM  P VLN+G L  KTDPVGQ+APSN+K                               
Subjt:  MPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQSAPSNKK-------------------------------

Query:  -----------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSK
                                     KM AYVQNDKLLIHCFQDSLS P SRWYMQLD+SHVGSWKNL DSFLKQY+ N+DMA DRLDLQRMEKKS 
Subjt:  -----------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSK

Query:  RSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI
        +SFKEYAQRWRDTAAQVQPPL DKELS++FINTLK  FYDRMIGSASTN SDIMTIGERI
Subjt:  RSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222313.0e-7653.77Show/hide
Query:  GKTATHSATSNNLVHEPQETPPYPPGY-------GPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPV
        GKT    A ++N +HEP  TP +PPG+       GP  R +TEGFM Q+TTYNPLYD+P GQ+P PLV G  Q PA IIF+EPEQ++  P VLN+GG   
Subjt:  GKTATHSATSNNLVHEPQETPPYPPGY-------GPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPV

Query:  KTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSR
          DP  Q APS++K                                                            KM AY+QNDKLLIHCFQDSLS P S 
Subjt:  KTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSR

Query:  WYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMT
        WYM LD+ HV SWKNL DSFLKQY+ N+DM  DRLDLQ MEKK+  SFKEY QRWRDTAAQ QPP TDKELSS+FINTLK  FYDRMIGSAST+ SDI+T
Subjt:  WYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMT

Query:  IGERI
        IGERI
Subjt:  IGERI

A0A6J1DZ90 Ribonuclease H1.2e-9663.76Show/hide
Query:  GKTATHSATSNNLVHEPQETPPYPPGYGPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQ
        GK     ATS+N +HEPQETPPYPPGYGPPLR V EGFMPQ+TTYNPLYDVP+GQYPH  V+GAQQIP NIIFREPEQMM  P V N+GG P KTDPV Q
Subjt:  GKTATHSATSNNLVHEPQETPPYPPGYGPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLNIGGLPVKTDPVGQ

Query:  SAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDN
        +A S +K                                                            KM AYVQN KLLIHCFQDSL    SRWYMQLD+
Subjt:  SAPSNKK------------------------------------------------------------KMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDN

Query:  SHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI
        SHVGSWKNL DSFLKQY+ N+DMA DRLDLQRMEK S  SFKEYAQRWRDTAAQVQPPLTDKELS++FINTLK  FYDRMIGSASTN SDIMTIGERI
Subjt:  SHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI

A0A6J1E2J7 Ribonuclease H1.3e-6060.91Show/hide
Query:  MMPLPMVLNIGGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKL
        MM  P VLN+GGLP KTD VGQ+APSN+K                                                            KM AYVQNDKL
Subjt:  MMPLPMVLNIGGLPVKTDPVGQSAPSNKK------------------------------------------------------------KMVAYVQNDKL

Query:  LIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYD
        LIHCFQDSLS P SRWYMQLD+S+VGSWKNL DSFLKQY+ N+DMA DRLDLQRMEKKS  SFKEYAQRWRDTAAQVQPPLTDKELS++FINTLK  FYD
Subjt:  LIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQPPLTDKELSSIFINTLKQSFYD

Query:  RMIGSASTNLSDIMTIGERI
        RMIG+ASTN SDIMTIGERI
Subjt:  RMIGSASTNLSDIMTIGERI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCTCCACTCAGGTTGACCATACTGCGAAAGCGTATGGAAGATTTGGGGGCCGTTTTCCTCTAGGCAAGACGGCTACTCATTCTGCTACATCTAACAACCTCGT
CCATGAGCCACAAGAAACCCCGCCTTATCCACCTGGGTACGGTCCACCTCTTAGGCATGTAACAGAGGGTTTCATGCCACAACATACAACGTACAACCCTCTGTATGACG
TCCCGGTTGGTCAGTATCCACATCCCCTTGTTGAGGGAGCTCAACAAATCCCAGCTAACATCATTTTTCGAGAGCCTGAGCAAATGATGCCACTTCCTATGGTCCTTAAT
ATAGGTGGTCTCCCAGTCAAGACAGACCCAGTCGGACAAAGTGCCCCCAGTAACAAGAAGAAGATGGTAGCGTACGTCCAAAATGACAAACTGTTGATACACTGCTTTCA
AGATAGTCTATCTTGTCCAACTTCTCGTTGGTACATGCAATTAGATAACTCTCATGTCGGTTCGTGGAAGAATCTGACCGACTCCTTCCTAAAGCAATATGAGCTTAACA
TGGACATGGCTCAAGACCGCTTAGATTTGCAAAGAATGGAGAAGAAGAGTAAAAGAAGCTTTAAGGAATACGCCCAAAGATGGAGGGACACAGCAGCTCAGGTTCAACCT
CCTTTAACTGATAAGGAGCTATCTTCTATATTTATCAACACTTTAAAGCAGTCCTTCTATGATCGAATGATAGGAAGTGCTTCCACTAATTTATCTGATATTATGACAAT
CGGAGAAAGAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCTCCACTCAGGTTGACCATACTGCGAAAGCGTATGGAAGATTTGGGGGCCGTTTTCCTCTAGGCAAGACGGCTACTCATTCTGCTACATCTAACAACCTCGT
CCATGAGCCACAAGAAACCCCGCCTTATCCACCTGGGTACGGTCCACCTCTTAGGCATGTAACAGAGGGTTTCATGCCACAACATACAACGTACAACCCTCTGTATGACG
TCCCGGTTGGTCAGTATCCACATCCCCTTGTTGAGGGAGCTCAACAAATCCCAGCTAACATCATTTTTCGAGAGCCTGAGCAAATGATGCCACTTCCTATGGTCCTTAAT
ATAGGTGGTCTCCCAGTCAAGACAGACCCAGTCGGACAAAGTGCCCCCAGTAACAAGAAGAAGATGGTAGCGTACGTCCAAAATGACAAACTGTTGATACACTGCTTTCA
AGATAGTCTATCTTGTCCAACTTCTCGTTGGTACATGCAATTAGATAACTCTCATGTCGGTTCGTGGAAGAATCTGACCGACTCCTTCCTAAAGCAATATGAGCTTAACA
TGGACATGGCTCAAGACCGCTTAGATTTGCAAAGAATGGAGAAGAAGAGTAAAAGAAGCTTTAAGGAATACGCCCAAAGATGGAGGGACACAGCAGCTCAGGTTCAACCT
CCTTTAACTGATAAGGAGCTATCTTCTATATTTATCAACACTTTAAAGCAGTCCTTCTATGATCGAATGATAGGAAGTGCTTCCACTAATTTATCTGATATTATGACAAT
CGGAGAAAGAATCTAG
Protein sequenceShow/hide protein sequence
MKFSTQVDHTAKAYGRFGGRFPLGKTATHSATSNNLVHEPQETPPYPPGYGPPLRHVTEGFMPQHTTYNPLYDVPVGQYPHPLVEGAQQIPANIIFREPEQMMPLPMVLN
IGGLPVKTDPVGQSAPSNKKKMVAYVQNDKLLIHCFQDSLSCPTSRWYMQLDNSHVGSWKNLTDSFLKQYELNMDMAQDRLDLQRMEKKSKRSFKEYAQRWRDTAAQVQP
PLTDKELSSIFINTLKQSFYDRMIGSASTNLSDIMTIGERI