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Moc01g15510 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g15510
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr1:9857427..9863683
RNA-Seq ExpressionMoc01g15510
SyntenyMoc01g15510
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]3.3e-1457.14Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
        SSAS VDHLPLKTLAI+PSLELALYALVKYSSQLNDLQLLHGNHS                         E  ++    RILG +E+SL LV S  YD
Subjt:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]5.7e-3078.57Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
        SSASC+ HLPLKTLAILPSLELA+YALVKYSSQLNDLQLL GNHSGLAGRTT DKV AI L+V EL+D  EII IT + RILG D +SLALVAS  YD
Subjt:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like1.6e-1457.14Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
        SSAS VDHLPLKTLAI+PSLELALYALVKYSSQLNDLQLLHGNHS                         E  ++    RILG +E+SL LV S  YD
Subjt:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein2.7e-3078.57Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
        SSASC+ HLPLKTLAILPSLELA+YALVKYSSQLNDLQLL GNHSGLAGRTT DKV AI L+V EL+D  EII IT + RILG D +SLALVAS  YD
Subjt:  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATCACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGGAGACCGGCAAGGTC
TCTGACAGGATTCTTGATAAGGCCTCAACGGCCCATTAAGGTAAGCTTGAATCACGACATGCTATTGTGGAGTTTGTCGGAATATGAGGCTAAGCGAGACACATCTAGTG
CTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTC
CTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAAGTGGCTGCAATTGTTCTACAGGTACCGGAGTTAGTAGATGACTTTGAAATAATTCTGATAAC
AGCTCGGTATAGGATATTGGGATTGGATGAAAACTCTCTTGCTTTAGTTGCCTCCTACTCTTATGATCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATCACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGGAGACCGGCAAGGTC
TCTGACAGGATTCTTGATAAGGCCTCAACGGCCCATTAAGGTAAGCTTGAATCACGACATGCTATTGTGGAGTTTGTCGGAATATGAGGCTAAGCGAGACACATCTAGTG
CTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTC
CTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAAGTGGCTGCAATTGTTCTACAGGTACCGGAGTTAGTAGATGACTTTGAAATAATTCTGATAAC
AGCTCGGTATAGGATATTGGGATTGGATGAAAACTCTCTTGCTTTAGTTGCCTCCTACTCTTATGATCGTTAG
Protein sequenceShow/hide protein sequence
MSFVVLEWVAGLLVVVSQSPEDGLKAAMEVVRRPARSLTGFLIRPQRPIKVSLNHDMLLWSLSEYEAKRDTSSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQL
LHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYDR