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Moc01g15550 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g15550
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr1:9894538..9899291
RNA-Seq ExpressionMoc01g15550
SyntenyMoc01g15550
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037793.1 uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]3.1e-4057.52Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHFA+AKFY+K +   + +  E+PL+   D  +L    +K L +   TF   K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
        +EAST+T K     D+K  N PI+RYVPLS+   GESPF E    LKV D+E+
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

TYK02888.1 uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa]2.4e-4058.17Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHFA+AKFY+K +   + +  E+PL+   D  +L    +K L +   TF   K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
        +EAST+T K     D+K  N PI+RYVPLS+   GESPF E    LKV D+EI
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]4.0e-4059.48Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHFA+AKFY K N I + +  E PL K  D  +L    T    E   TF+  K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
         EA T++TK    KD+   NTP++RYVPLS+   GESPF E    LKV D+EI
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]4.0e-4059.48Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHFA+AKFY K N I + +  E PL K  D  +L    T    E   TF+  K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
         EA T++TK    KD+   NTP++RYVPLS+   GESPF E    LKV D+EI
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.0e-4059.48Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHFA+AKFY K N I + +  E PL K  D  +L    T    E   TF+  K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
         EA T++TK    KD+   NTP++RYVPLS+   GESPF E    LKV D+EI
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

TrEMBL top hitse value%identityAlignment
A0A5A7SVR4 Uncharacterized protein2.8e-3956.86Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHF +AKFY+K +   + +  E+PL+   D  +L    +K   + + TF   K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
        +EAST+T K     D+K  N PI+RYVPLS+   GESPF E    LKV D+EI
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

A0A5A7SX42 Ty3-gypsy retrotransposon protein1.7e-3955.56Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVE D+NLFSE  SHF +AKFY+K +   + +  EIPL+   D  +L    ++   +   TF+  K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
         E ST+TTK     D+K  N PI+RYVPLS+C  GESPF E    LKV D+E+
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

A0A5A7T485 Reverse transcriptase1.5e-4057.52Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHFA+AKFY+K +   + +  E+PL+   D  +L    +K L +   TF   K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
        +EAST+T K     D+K  N PI+RYVPLS+   GESPF E    LKV D+E+
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

A0A5A7UKY9 Reverse transcriptase domain-containing protein4.8e-3956.86Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG  WIH NGV+TSTLHQCFKFYQDGIKKVEAD+N FSEAESHFA+AKFY+K +   +T+  E+PL+   D  +L    ++   +   TF   K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
         EAST+TTK     D+K  N PI+RYVPL++   GESPF E    LKV D+E+
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

A0A5D3BV77 Reverse transcriptase1.1e-4058.17Show/hide
Query:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK
        TTYKLLLG PWIH NGV+TSTLHQCFKFYQDG+KKVEAD+N FSEAESHFA+AKFY+K +   + +  E+PL+   D  +L    +K L +   TF   K
Subjt:  TTYKLLLGPPWIHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQK

Query:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI
        +EAST+T K     D+K  N PI+RYVPLS+   GESPF E    LKV D+EI
Subjt:  NEASTNTTKLWDSKDKKVPNTPIIRYVPLSQCMNGESPFTECLGILKVSDVEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATTTCGCCCGATCCATTCCGCATTCTTCTAGACCTCTTTTGTGTATCTTCTTTGGATCACTGGCGAGCGTCTTGCATCACATACGGCTTATTTCAATCGATTCT
TGATACAGATACAGAGAAGGGACGTTCGATCTTTGCATCTCCACATGTCGGATTCGGTGTCCATGCCCACCAACATATAGGAGCGGTTTTATATTGTGAAGAATTGAATG
CCTTTGCGGTGCAGTGGCTCTCTTTTCTGAATGTAGTTTCTGAGTTCCTTGAGGAGGAATGTTGTTCTATGGTCTTGACGACCTACAAGCTACTACTAGGGCCCCCTTGG
ATTCATGAAAATGGAGTGATAACTTCTACGTTGCACCAATGTTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGATACCAACTTATTCTCGGAGGCTGAGTC
TCATTTTGCAAATGCGAAATTCTATATGAAGACTAATGTTATAGGGAAAACTATGCTGACGGAAATCCCCTTAATCAAGAGCTGTGATAAACCCAAGTTGCATGAAGATC
CAACCAAAAGATTGATTGAAGAAGTAAACACTTTTGATGTCCAAAAGAATGAGGCATCTACCAATACCACGAAGTTATGGGATTCAAAGGATAAGAAAGTGCCAAATACT
CCTATCATTCGTTATGTCCCTTTATCTCAGTGCATGAACGGTGAATCACCATTCACAGAATGTTTAGGAATCCTGAAGGTTAGTGATGTGGAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATTTCGCCCGATCCATTCCGCATTCTTCTAGACCTCTTTTGTGTATCTTCTTTGGATCACTGGCGAGCGTCTTGCATCACATACGGCTTATTTCAATCGATTCT
TGATACAGATACAGAGAAGGGACGTTCGATCTTTGCATCTCCACATGTCGGATTCGGTGTCCATGCCCACCAACATATAGGAGCGGTTTTATATTGTGAAGAATTGAATG
CCTTTGCGGTGCAGTGGCTCTCTTTTCTGAATGTAGTTTCTGAGTTCCTTGAGGAGGAATGTTGTTCTATGGTCTTGACGACCTACAAGCTACTACTAGGGCCCCCTTGG
ATTCATGAAAATGGAGTGATAACTTCTACGTTGCACCAATGTTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGATACCAACTTATTCTCGGAGGCTGAGTC
TCATTTTGCAAATGCGAAATTCTATATGAAGACTAATGTTATAGGGAAAACTATGCTGACGGAAATCCCCTTAATCAAGAGCTGTGATAAACCCAAGTTGCATGAAGATC
CAACCAAAAGATTGATTGAAGAAGTAAACACTTTTGATGTCCAAAAGAATGAGGCATCTACCAATACCACGAAGTTATGGGATTCAAAGGATAAGAAAGTGCCAAATACT
CCTATCATTCGTTATGTCCCTTTATCTCAGTGCATGAACGGTGAATCACCATTCACAGAATGTTTAGGAATCCTGAAGGTTAGTGATGTGGAAATTTGA
Protein sequenceShow/hide protein sequence
MRISPDPFRILLDLFCVSSLDHWRASCITYGLFQSILDTDTEKGRSIFASPHVGFGVHAHQHIGAVLYCEELNAFAVQWLSFLNVVSEFLEEECCSMVLTTYKLLLGPPW
IHENGVITSTLHQCFKFYQDGIKKVEADTNLFSEAESHFANAKFYMKTNVIGKTMLTEIPLIKSCDKPKLHEDPTKRLIEEVNTFDVQKNEASTNTTKLWDSKDKKVPNT
PIIRYVPLSQCMNGESPFTECLGILKVSDVEI