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Moc01g15560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g15560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:9904263..9904592
RNA-Seq ExpressionMoc01g15560
SyntenyMoc01g15560
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN81130.1 hypothetical protein VITISV_003944 [Vitis vinifera]6.9e-1345.1Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+T+ FN+ M E+ SV  H+N    + NQL S+EI F DE++A+ +L+SLP SWE ++M V NS G + LK +DI D+ +A+EIRR+ +G+ S   S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

CAN83869.1 hypothetical protein VITISV_037705 [Vitis vinifera]1.8e-1345.1Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+ + FN+ M E++SV  H+N    + NQL S+EI F DE++A+ +L+SLP SWE I+M + NS G K LK +DI D+ +A+EIRR+ +G+ S  +S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

KAB5537804.1 hypothetical protein DKX38_015337 [Salix brachista]5.3e-1345.1Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+ + FN+ M +DMSV  H+N    + NQL S+EI F DE++A+ +L+SLP SWE ++MVV NS G   L   DI D+ +A+E+RR+ SG+ S   S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

RVW62324.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.3e-1347.37Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKS
        ++L+ + FN+ M E+ SV  H+N    + NQL S+EI F DE++A+ +L+SLP +WE ++MVV NS G + LK +DI D+ +AKEIRR+ +GK S
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKS

RVX11921.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.3e-1346.08Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+ + FN+ M E+ SV  H+N    + NQL S+EI F DE+ A+ +L+SLP SWE ++M V NS+G + LK +DI D+ +AKEIRRK +G+ S   S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

TrEMBL top hitse value%identityAlignment
A0A438FQT9 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1347.37Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKS
        ++L+ + FN+ M E+ SV  H+N    + NQL S+EI F DE++A+ +L+SLP +WE ++MVV NS G + LK +DI D+ +AKEIRR+ +GK S
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKS

A0A438JSJ0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1346.08Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+ + FN+ M E+ SV  H+N    + NQL S+EI F DE+ A+ +L+SLP SWE ++M V NS+G + LK +DI D+ +AKEIRRK +G+ S   S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

A0A5N5L4X5 CCHC-type domain-containing protein2.6e-1345.1Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+ + FN+ M +DMSV  H+N    + NQL S+EI F DE++A+ +L+SLP SWE ++MVV NS G   L   DI D+ +A+E+RR+ SG+ S   S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

A5BGX3 Uncharacterized protein3.3e-1345.1Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+T+ FN+ M E+ SV  H+N    + NQL S+EI F DE++A+ +L+SLP SWE ++M V NS G + LK +DI D+ +A+EIRR+ +G+ S   S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

A5C2X4 Integrase catalytic domain-containing protein8.8e-1445.1Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG
        ++L+ + FN+ M E++SV  H+N    + NQL S+EI F DE++A+ +L+SLP SWE I+M + NS G K LK +DI D+ +A+EIRR+ +G+ S  +S 
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSG

Query:  EN
         N
Subjt:  EN

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-0432.58Show/hide
Query:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRK
        +YL  + + +HM E  +  SH+NV   LI QL ++ +   +E KAI LL+SLP S++ +   +L+  G  +++  D+    +  E  RK
Subjt:  MYLITRYFNIHM-EDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCTCATTACAAGATACTTCAACATCCACATGGAGGATATGTCAGTGAACTCCCACGTTAATGTAGTCACTCAATTGATAAACCAGTTGGAGTCGATGGAGATCAC
CTTTTCAGATGAGGTGAAGGCTATAAAACTGTTGTCTTCTTTGCCTGAGAGTTGGGAAACGATAAAGATGGTGGTGCTGAATTCGTTGGGGGACAAGAGTCTGAAATCTT
CAGATATCTGTGACGTTGCAATTGCTAAGGAGATTCGCAGAAAAGGAAGTGGAAAGAAATCCGCATACACTTCTGGGGAGAACTCTATGGAGACAGCATTGATAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATCTCATTACAAGATACTTCAACATCCACATGGAGGATATGTCAGTGAACTCCCACGTTAATGTAGTCACTCAATTGATAAACCAGTTGGAGTCGATGGAGATCAC
CTTTTCAGATGAGGTGAAGGCTATAAAACTGTTGTCTTCTTTGCCTGAGAGTTGGGAAACGATAAAGATGGTGGTGCTGAATTCGTTGGGGGACAAGAGTCTGAAATCTT
CAGATATCTGTGACGTTGCAATTGCTAAGGAGATTCGCAGAAAAGGAAGTGGAAAGAAATCCGCATACACTTCTGGGGAGAACTCTATGGAGACAGCATTGATAGCCTAG
Protein sequenceShow/hide protein sequence
MYLITRYFNIHMEDMSVNSHVNVVTQLINQLESMEITFSDEVKAIKLLSSLPESWETIKMVVLNSLGDKSLKSSDICDVAIAKEIRRKGSGKKSAYTSGENSMETALIA