; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g16100 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g16100
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionZinc finger, CCHC-type
Genome locationchr1:10390025..10391606
RNA-Seq ExpressionMoc01g16100
SyntenyMoc01g16100
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85693.1 hypothetical protein Acr_04g0004310 [Actinidia rufa]6.0e-0425.41Show/hide
Query:  IFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASV--
        +F+ E     +   D+ ++     + SR+          KG  K  W+     S  +G+  +RC YC ++GH+KRDC     K   +++ S  A  +V  
Subjt:  IFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASV--

Query:  -GENVVTYSDVLAATDNRLGESYQEWDGGSVYM-----GCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAALI
          + +    DV      +L E   E   GS +      GC +    G L V K ++ +L G K  GLY ++     G A +
Subjt:  -GENVVTYSDVLAATDNRLGESYQEWDGGSVYM-----GCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAALI

PON41343.1 Zinc finger, CCHC-type [Parasponia andersonii]1.8e-0534.62Show/hide
Query:  KENVSAEGHFAKGRN-KNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASVGENVVTYSDVLAATDNRLGESYQEW--DG
        KE  + EG  A+GR+ K + K  + +S  K K  ++C +CHK+GH KRDC   KKK  +  K   P EASV  +    ++VL  TD    +S +EW  D 
Subjt:  KENVSAEGHFAKGRN-KNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASVGENVVTYSDVLAATDNRLGESYQEW--DG

Query:  GSVYMGCEYSGHDGTLEVRKNSRIVLVGEK
        G  +  C        LE      ++L   K
Subjt:  GSVYMGCEYSGHDGTLEVRKNSRIVLVGEK

TYK02285.1 putative gag protein [Cucumis melo var. makuwa]3.7e-0633.96Show/hide
Query:  KNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKG-HLKRDCYFLKKKQNLKNKKSQPAEASVG---ENVVTYSDVLAATD
        + +  ++ A +K+  S EG F+KGR+KN+WKD   +  +K K+    +   K+G  +  D   L   QN  N +S   E  +G    +V+ Y D L    
Subjt:  KNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKG-HLKRDCYFLKKKQNLKNKKSQPAEASVG---ENVVTYSDVLAATD

Query:  NRLGESYQEWDGGSVYMGCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL
        + L  +   + G    +GCEY G  G  EV+K+ R +LV  K NGLY++KDI    +AL
Subjt:  NRLGESYQEWDGGSVYMGCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]4.6e-0438.46Show/hide
Query:  KLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASVGENVVTYSDVLAATD
        +LQ ++K+    EG F KG NK             G+       C +   +K+DCY LK+K N +NK  +  EA+VGEN + YSD LAAT+
Subjt:  KLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASVGENVVTYSDVLAATD

TrEMBL top hitse value%identityAlignment
A0A2P5AXR9 Zinc finger, CCHC-type9.0e-0634.62Show/hide
Query:  KENVSAEGHFAKGRN-KNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASVGENVVTYSDVLAATDNRLGESYQEW--DG
        KE  + EG  A+GR+ K + K  + +S  K K  ++C +CHK+GH KRDC   KKK  +  K   P EASV  +    ++VL  TD    +S +EW  D 
Subjt:  KENVSAEGHFAKGRN-KNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASVGENVVTYSDVLAATDNRLGESYQEW--DG

Query:  GSVYMGCEYSGHDGTLEVRKNSRIVLVGEK
        G  +  C        LE      ++L   K
Subjt:  GSVYMGCEYSGHDGTLEVRKNSRIVLVGEK

A0A5D3BSZ6 Putative gag protein1.8e-0633.96Show/hide
Query:  KNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKG-HLKRDCYFLKKKQNLKNKKSQPAEASVG---ENVVTYSDVLAATD
        + +  ++ A +K+  S EG F+KGR+KN+WKD   +  +K K+    +   K+G  +  D   L   QN  N +S   E  +G    +V+ Y D L    
Subjt:  KNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKG-HLKRDCYFLKKKQNLKNKKSQPAEASVG---ENVVTYSDVLAATD

Query:  NRLGESYQEWDGGSVYMGCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL
        + L  +   + G    +GCEY G  G  EV+K+ R +LV  K NGLY++KDI    +AL
Subjt:  NRLGESYQEWDGGSVYMGCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAAL

A0A5D3BU40 Transposon Tf2-1 polyprotein isoform X16.4e-0473.33Show/hide
Query:  GSFNRNKFKKLEMPIFSSEDLDAWLFRADR
        GS +RNKFKK+EMP+F+ ED D+WLFRADR
Subjt:  GSFNRNKFKKLEMPIFSSEDLDAWLFRADR

A0A7J0EGT7 CCHC-type domain-containing protein2.9e-0425.41Show/hide
Query:  IFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASV--
        +F+ E     +   D+ ++     + SR+          KG  K  W+     S  +G+  +RC YC ++GH+KRDC     K   +++ S  A  +V  
Subjt:  IFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAEASV--

Query:  -GENVVTYSDVLAATDNRLGESYQEWDGGSVYM-----GCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAALI
          + +    DV      +L E   E   GS +      GC +    G L V K ++ +L G K  GLY ++     G A +
Subjt:  -GENVVTYSDVLAATDNRLGESYQEWDGGSVYM-----GCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAALI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCCTTTAATCGCAACAAATTCAAGAAATTGGAAATGCCAATTTTCTCTAGTGAAGACCTCGATGCGTGGCTTTTCCGAGCCGATAGACCAAAGAACTCGAACTT
CAAGCTTCAAGCTTCAAGAAAAGAGAATGTGAGTGCTGAAGGACATTTTGCAAAAGGCAGAAATAAGAACAATTGGAAAGATACTAAATACCAAAGTGGGGAGAAAGGTA
AACAAGAAATCAGATGCAGCTATTGCCACAAGAAGGGTCACCTGAAAAGAGATTGTTATTTTCTTAAAAAGAAGCAAAACTTGAAGAACAAGAAATCACAGCCTGCTGAA
GCCTCTGTAGGAGAAAATGTTGTTACTTATTCGGATGTTTTGGCAGCAACAGATAATCGACTTGGTGAAAGTTACCAAGAATGGGATGGTGGTTCTGTTTACATGGGCTG
TGAATACAGTGGACATGATGGTACACTTGAGGTAAGAAAAAATTCCAGAATTGTGTTGGTTGGAGAAAAAGTGAATGGGTTGTATGTGGTCAAAGATATTGATTCTCCTG
GTGCTGCATTAATAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTCCTTTAATCGCAACAAATTCAAGAAATTGGAAATGCCAATTTTCTCTAGTGAAGACCTCGATGCGTGGCTTTTCCGAGCCGATAGACCAAAGAACTCGAACTT
CAAGCTTCAAGCTTCAAGAAAAGAGAATGTGAGTGCTGAAGGACATTTTGCAAAAGGCAGAAATAAGAACAATTGGAAAGATACTAAATACCAAAGTGGGGAGAAAGGTA
AACAAGAAATCAGATGCAGCTATTGCCACAAGAAGGGTCACCTGAAAAGAGATTGTTATTTTCTTAAAAAGAAGCAAAACTTGAAGAACAAGAAATCACAGCCTGCTGAA
GCCTCTGTAGGAGAAAATGTTGTTACTTATTCGGATGTTTTGGCAGCAACAGATAATCGACTTGGTGAAAGTTACCAAGAATGGGATGGTGGTTCTGTTTACATGGGCTG
TGAATACAGTGGACATGATGGTACACTTGAGGTAAGAAAAAATTCCAGAATTGTGTTGGTTGGAGAAAAAGTGAATGGGTTGTATGTGGTCAAAGATATTGATTCTCCTG
GTGCTGCATTAATAACATAA
Protein sequenceShow/hide protein sequence
MGSFNRNKFKKLEMPIFSSEDLDAWLFRADRPKNSNFKLQASRKENVSAEGHFAKGRNKNNWKDTKYQSGEKGKQEIRCSYCHKKGHLKRDCYFLKKKQNLKNKKSQPAE
ASVGENVVTYSDVLAATDNRLGESYQEWDGGSVYMGCEYSGHDGTLEVRKNSRIVLVGEKVNGLYVVKDIDSPGAALIT