CuGenDBv2

Gene ID	Moc01g16320
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr1:10509866..10514521
RNA-Seq Expression	Moc01g16320
Synteny	Moc01g16320
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-17

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-100

55.34

Show/hide

Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-17

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-17

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-100

55.34

Show/hide

Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-100

54.72

Show/hide

Query:  IRAIMSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMD
        +  IM+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL + CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMD
Subjt:  IRAIMSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMD

Query:  SLYGMFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLM
        SL  MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLM
Subjt:  SLYGMFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLM

Query:  KNKRPEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVL
        K K  +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVL
Subjt:  KNKRPEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVL

Query:  EKCLVENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        E CLVENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  EKCLVENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-17

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-100

55.34

Show/hide

Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-17

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-100

55.34

Show/hide

Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

9.0e-18

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

A0A5A7SMH8 Gag/pol protein

6.5e-101

55.34

Show/hide

Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

A0A5A7TWB9 Gag/pol protein

9.0e-18

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

A0A5A7TWB9 Gag/pol protein

6.5e-101

55.34

Show/hide

Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

A0A5A7V4M1 Gag/pol protein

5.0e-101

54.72

Show/hide

Query:  IRAIMSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMD
        +  IM+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL + CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMD
Subjt:  IRAIMSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMD

Query:  SLYGMFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLM
        SL  MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLM
Subjt:  SLYGMFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLM

Query:  KNKRPEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVL
        K K  +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVL
Subjt:  KNKRPEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVL

Query:  EKCLVENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        E CLVENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  EKCLVENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

A0A5A7V4M1 Gag/pol protein

9.0e-18

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

A0A5A7V4M1 Gag/pol protein

6.5e-101

55.34

Show/hide

Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

A0A5D3CPJ6 Gag/pol protein

9.0e-18

47.37

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Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

A0A5D3CPJ6 Gag/pol protein

6.5e-101

55.34

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Query:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG
        M+++ +++LAADKL  + Y +WK  ++T+L++DDL FVL E CP+    +AT+ +R  Y+RW K N KAR YILA++S+VL  KHE+M+T  EIMDSL  
Subjt:  MSTSLISLLAADKLTEHYYPAWKTNLHTILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYG

Query:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR
        MFG+ S Q+ H+ALK+I+N+ M EG SVR HVL+M VHFNVA+MNG VI+++SQVSFI+ESLP+S LQFRSNAVMNK+ Y LTTLLNELQT+ESLMK K 
Subjt:  MFGKPSSQVIHEALKFIFNSLM-EGTSVRGHVLSMTVHFNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKR

Query:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL
         +GEAN  TS + FHR                                           +G CFHC  +GHWK NC KYLAEKKK K+GK+++LVLE CL
Subjt:  PEGEANSVTSKKNFHR-------------------------------------------EGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKFNVLVLEKCL

Query:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL
        VENDDS+ IIDSGATNHVCSS Q ISS RQLE  EM++RVGTG +VS +AV  ++L
Subjt:  VENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKL

A0A5D3CSZ6 Gag/pol protein

9.0e-18

47.37

Show/hide

Query:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE
        N++     +  L+EDH+R+HKP SK+VLNE+S E+   ST     PS  TR+    S++  HQ  Q L  PR S RV   P RY+ LTE+  VI D  +E
Subjt:  NRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESI--STTDTAGPS--TRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVE

Query:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI
        D L++K AM+DVDKDEW+KAM+   +SMY NS+
Subjt:  DSLSYKHAMKDVDKDEWVKAMD---QSMYSNSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAGGTGTCATCAGGGCTATGCTTAAGGAAGTAAAGCGACATAAAGGATTTGGGAGACAAAGGCTGACTGAGTCGGGAATGCGGTATTTTAAGTGGAGACGGCGTAA
GTCCCTCGCTGTAATTGTAGAGTTGTCCACCCAGGAAGGACGAAAAGATAGGGATTCAGAGGAAGGGTTGACTGACGAGTCGTCATCGGAGGTCCATTGGGCATGGTGCA
AACCAGAAATTGACAGTGACAACTCTTATCGTGACCCGCCAGTCAATGTGAAAGTAAGCCAGGCGAAACAACCCGCGAAGGACGGATCGGACCGAGCAGGGCTCGGTTCC
GACCCCTACTCAGTGTCGAGCACCGTCCTTGTTCCTCTACTAATGCTGGAGGGGTCCCGGCCCATAGGCCCACGTGTATCAAACCTAGGGTTGGCATTTTGTGAAACCCT
AGGGGGAAAATCGACTATAAATAGGGAGAGGGGTCACCTCTTGAAGGTATCTGATCCTTTGATATTCGAGTTTGGTGCACATTGTAGAGTGAATCGGTCTACCAAAATCC
AAGCATCAACATTTCATATACGAGCAATTATGTCTACGTCTTTAATTTCACTTCTCGCCGCCGATAAACTAACTGAGCATTACTATCCCGCGTGGAAAACGAACCTTCAC
ACCATACTCGTAGTAGATGATCTCTACTTTGTCTTAACGGAGGCTTGTCCGGAGACCTCTAGACCTGACGCCACGAAAGCTATTCGTGGCGTATATGATAGGTGGACAAA
GGTCAACTCAAAAGCCCGAGTCTACATCTTGGCCAACATATCTGATGTTTTGGTTAATAAGCATGAGACCATGATCACTACACTCGAGATCATGGATTCATTGTATGGCA
TGTTTGGAAAACCTTCCTCACAAGTCATCCATGAAGCTCTCAAATTCATCTTCAACTCACTAATGGAGGGAACATCTGTCCGAGGACATGTTCTCAGTATGACGGTCCAC
TTCAACGTGGCGGATATGAATGGTGTTGTCATCAACGACTCCAGCCAAGTCAGTTTTATTATGGAGTCTCTTCCGAAGAGCTTGCTTCAGTTTCGCAGCAACGCTGTGAT
GAATAAACTGGAATACAACCTTACCACGCTCCTCAACGAGCTCCAAACTTACGAGTCCCTTATGAAAAATAAGCGACCTGAAGGGGAGGCAAATTCTGTCACCTCCAAAA
AAAACTTCCACAGAGAAGGGAAATGTTTTCACTGTGGTGTTGACGGGCACTGGAAGATGAACTGTCATAAGTACTTGGCCGAGAAGAAAAAAGTCAAAGAAGGTAAATTC
AATGTACTCGTTCTAGAAAAATGTTTGGTGGAGAATGATGATTCTTCCGGGATAATTGATTCGGGAGCCACTAATCATGTTTGCTCTTCTTTACAGGAAATTAGTTCCTT
GAGGCAACTGGAGGCTGAAGAGATGTCTCTCAGAGTTGGAACCGGAGAGATCGTCTCTGTTGTTGCGGTGGCCAGCGTCAAGCTTGGCCACATTAATCTCAACAGGATTG
AGAAGCTCGTTAAGAGCGATCTCCTAAAAGAAGACCATGTAAGAGATCATAAACCCCATAGTAAAATGGTGTTAAATGAAATTTCTAATGAAAGTATCAGTACGACTGAT
ACTGCTGGACCATCAACAAGGATTGACGATGGAGCCAGTACATCGAGCCAACATCAAACTTCACAAGATTTGATAGGGCCTCGATGTAGTGAGAGGGTTGTAACTCAGCC
TGACCGTTACGTGGGATTAACAGAATCTTATATCGTCATACTTGATGATGGCGTTGAGGACTCGTTGTCTTATAAACATGCAATGAAAGATGTTGACAAAGATGAATGGG
TCAAGGCTATGGATCAGTCTATGTACTCCAATTCCATCTAG

mRNA sequence

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Protein sequence

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MKGVIRAMLKEVKRHKGFGRQRLTESGMRYFKWRRRKSLAVIVELSTQEGRKDRDSEEGLTDESSSEVHWAWCKPEIDSDNSYRDPPVNVKVSQAKQPAKDGSDRAGLGS
DPYSVSSTVLVPLLMLEGSRPIGPRVSNLGLAFCETLGGKSTINRERGHLLKVSDPLIFEFGAHCRVNRSTKIQASTFHIRAIMSTSLISLLAADKLTEHYYPAWKTNLH
TILVVDDLYFVLTEACPETSRPDATKAIRGVYDRWTKVNSKARVYILANISDVLVNKHETMITTLEIMDSLYGMFGKPSSQVIHEALKFIFNSLMEGTSVRGHVLSMTVH
FNVADMNGVVINDSSQVSFIMESLPKSLLQFRSNAVMNKLEYNLTTLLNELQTYESLMKNKRPEGEANSVTSKKNFHREGKCFHCGVDGHWKMNCHKYLAEKKKVKEGKF
NVLVLEKCLVENDDSSGIIDSGATNHVCSSLQEISSLRQLEAEEMSLRVGTGEIVSVVAVASVKLGHINLNRIEKLVKSDLLKEDHVRDHKPHSKMVLNEISNESISTTD
TAGPSTRIDDGASTSSQHQTSQDLIGPRCSERVVTQPDRYVGLTESYIVILDDGVEDSLSYKHAMKDVDKDEWVKAMDQSMYSNSI

Moc01g16320 (gene) of Bitter gourd (OHB3-1) v2 genome