CuGenDBv2

Gene ID	Moc01g17100
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Genome location	chr1:11488038..11488736
RNA-Seq Expression	Moc01g17100
Synteny	Moc01g17100
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily IPR023780 - Chromo domain IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]

2.7e-91

68.53

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER R+  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

KAA0045218.1 reverse transcriptase [Cucumis melo var. makuwa]

2.7e-91

68.53

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+L+KW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

2.7e-91

68.97

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V  P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]

5.5e-92

69.4

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEW+Q+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL PKQ+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLKSYH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

TYK29200.1 reverse transcriptase [Cucumis melo var. makuwa]

1.6e-91

68.97

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUK4 Reverse transcriptase

1.3e-91

68.53

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER R+  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

A0A5A7TQR5 Reverse transcriptase

1.3e-91

68.53

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+L+KW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

A0A5A7V577 Reverse transcriptase

1.3e-91

68.97

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V  P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

A0A5D3BQE4 Reverse transcriptase

2.6e-92

69.4

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEW+Q+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL PKQ+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLKSYH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

A0A5D3E114 Reverse transcriptase

7.7e-92

68.97

Show/hide

Query:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+AGK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK R
Subjt:  MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PLEF+ GDQVLIKL P+Q+RFRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN V +P++ L+ K  K+VEEI
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Query:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW
        LAER RR  RP R + E+LVKW  LP EE SW
Subjt:  LAERTRRVGRPRRDVQEFLVKWTELPDEEISW

SwissProt top hits

e value

%identity

Alignment

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.6e-14

29.82

Show/hide

Query:  LEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHI-IDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        L   LR ++    +NW   L   +F +N   + T GK+PFEI  G+LP  P I  D     +S  A    K  +  T   +  LE A   M    +++ +
Subjt:  LEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHI-IDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYH
        PL   +GD VL+    +   F+     ++ + Y GP  V++K+   +Y + L S  K H VI++  LKS +
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYH

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.1e-13

Show/hide

Query:  LEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHI-IDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR
        L   LR +     +NW   L   +F +N   + T GK+PFEI  G+LP  P I  D     +S  A    K  +  T   +  LE A   M    +++ +
Subjt:  LEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHI-IDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCR

Query:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI
        PL   +GD VL+    +   F+     ++ + Y GP  V++K+   +Y + L S  K H VI++  LK +           V +P     NK +   E I
Subjt:  PLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGGAGGAATACCTCCGCCACTTCATTGATGCTCGACAGAAAAACTGGATTCAGATGCTTGATGTAGCCCAATTTTGTTTCAACTGCCAAAAGAGCACGACTACAGG
GAAGGCTCCTTTTGAAATAGTATGCGGGCACTTACCTGTGTTACCTCACATCATCGACTATCCTTACGCAGGAAAGAGCCCCCAAGCTTACAACTTCACCAAAGAATGGC
GACAATCCACGGATGTTGCCCGAGCATACCTTGAGAAGGCGTCTAAGCACATGAACAAGTGGGCCGACAAGAAGTGCAGACCGTTGGAATTTCAAGTAGGAGATCAAGTG
CTCATTAAATTACACCCGAAACAGCTCCGATTCCGGGGTAACACAGATCAACGCCTTATGCGAAAATACGATGGTCCAGTCAACGTCATTCAGAAGGTCGGGAAGACGTC
ATACAGGGTCCAATTACCCTCATGGATGAAAATCCACCCAGTGATTCACTTGAGCAACTTAAAATCCTATCACCCAAACACCATTGGTCCCGCACGTAATGAAGTGATCC
AACCAGTGGTCACCTTGAACAACAAGATGGTAAAAGAAGTTGAAGAAATCTTAGCCGAAAGAACTCGTCGAGTCGGACGACCGAGAAGGGACGTACAGGAATTCTTAGTG
AAATGGACAGAGCTTCCAGATGAAGAAATCAGTTGGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQV
LIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLV
KWTELPDEEISW

Moc01g17100 (gene) of Bitter gourd (OHB3-1) v2 genome