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Moc01g17110 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g17110
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr1:11488922..11491088
RNA-Seq ExpressionMoc01g17110
SyntenyMoc01g17110
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-2164.56Show/hide
Query:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQP
        MKAVNS ALPI+G+ KR  +++G WSG VDFV+++MDDFDVVL M+FLL+++VIPMPL KCLV+TG  P+VV+T ++QP
Subjt:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQP

KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-4668.75Show/hide
Query:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA
        S +A DALS+KSE AALC+LAHL+ SK+ GS+R+ ++  L+ DP  QT++ LAK GKTRQFWVEDDL+ T+GNRLYVPRAG++RK L+ ECHDT+WAGH 
Subjt:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA

Query:  AWQRIYALLKKGYYWSNLRDDVMQYTKT
         WQR YALLKKGY+W N+RDDVMQYTKT
Subjt:  AWQRIYALLKKGYYWSNLRDDVMQYTKT

KAA0060776.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-4668.75Show/hide
Query:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA
        S +A DALS+KSE AALC+LAHL+ SK+ GS+R+ ++  L+ DP  QT++ LAK GKTRQFWVEDDL+ T+GNRLYVPRAG++RK L+ ECHDT+WAGH 
Subjt:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA

Query:  AWQRIYALLKKGYYWSNLRDDVMQYTKT
         WQR YALLKKGY+W N+RDDVMQYTKT
Subjt:  AWQRIYALLKKGYYWSNLRDDVMQYTKT

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.3e-5279.07Show/hide
Query:  RSNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGH
        R+NQA DALS+KSE AALCMLAHLKASKLTGS+REAI+ +L++DP  Q IIQLA +G TRQF VE+DL FTKGN LYVPR+GNLRK L+GECHDTMWAGH
Subjt:  RSNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGH

Query:  AAWQRIYALLKKGYYWSNLRDDVMQYTKT
        A WQR YALLKKGYYW +LRDDVMQYTKT
Subjt:  AAWQRIYALLKKGYYWSNLRDDVMQYTKT

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]9.4e-2780.49Show/hide
Query:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQPTEV
        MKAVNS ALPI+G+AKRV +K+GTWSG VDFVI+RMDDFDVVL +KFLLE+KVIPMPLAKCLVVT SDP VV+TSIKQP+ V
Subjt:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQPTEV

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]2.5e-4868.99Show/hide
Query:  RSNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGH
        +SNQA DALS+K EHAALCMLAH+ +SK+ GS+R+ IK HL  DP+ + +++LAK GKTRQFWVE DL+ TKGNRLYVPR G LRK L+ ECHDT+WAGH
Subjt:  RSNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGH

Query:  AAWQRIYALLKKGYYWSNLRDDVMQYTKT
          WQR YAL+KKGY+W N+RDD+MQYTKT
Subjt:  AAWQRIYALLKKGYYWSNLRDDVMQYTKT

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]6.9e-2270.89Show/hide
Query:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQP
        MKAVNS ALPIVG++K V  KIG W+G++D V++RMDDFDVVL M+FLLE+KVIPMPLAKCLV+T  +PTV+  SIKQP
Subjt:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQP

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]4.8e-4770.31Show/hide
Query:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA
        SNQA DALS+K EHAA+C+LAHL+ S++ GSVR+ ++  L+ D   Q ++ LAK GKTRQFWVEDDL  TKGNRLYVPRAGNLRK L+ ECHDT+WAGH 
Subjt:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA

Query:  AWQRIYALLKKGYYWSNLRDDVMQYTKT
         WQR YALLKKGY+W N+RDDVMQYTKT
Subjt:  AWQRIYALLKKGYYWSNLRDDVMQYTKT

TrEMBL top hitse value%identityAlignment
A0A5A7UY33 Reverse transcriptase1.7e-2164.56Show/hide
Query:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQP
        MKAVNS ALPI+G+ KR  +++G WSG VDFV+++MDDFDVVL M+FLL+++VIPMPL KCLV+TG  P+VV+T ++QP
Subjt:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQP

A0A5A7UY33 Reverse transcriptase6.7e-4768.75Show/hide
Query:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA
        S +A DALS+KSE AALC+LAHL+ SK+ GS+R+ ++  L+ DP  QT++ LAK GKTRQFWVEDDL+ T+GNRLYVPRAG++RK L+ ECHDT+WAGH 
Subjt:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA

Query:  AWQRIYALLKKGYYWSNLRDDVMQYTKT
         WQR YALLKKGY+W N+RDDVMQYTKT
Subjt:  AWQRIYALLKKGYYWSNLRDDVMQYTKT

A0A5A7V2E6 Reverse transcriptase8.8e-4768.75Show/hide
Query:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA
        SNQA DALS+K EHAA+C+LAHL+ S++ GSVR+ ++  L+ D   Q ++ LAK GKTRQFWVE+DL+ TKGNRLYVP+AGNLRK L+ ECHDT+WAGH 
Subjt:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA

Query:  AWQRIYALLKKGYYWSNLRDDVMQYTKT
         WQR YALLKKGY+W N+RDDVMQYTKT
Subjt:  AWQRIYALLKKGYYWSNLRDDVMQYTKT

A0A5D3BPV8 Reverse transcriptase6.7e-4768.75Show/hide
Query:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA
        S +A DALS+KSE AALC+LAHL+ SK+ GS+R+ ++  L+ DP  QT++ LAK GKTRQFWVEDDL+ T+GNRLYVPRAG++RK L+ ECHDT+WAGH 
Subjt:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA

Query:  AWQRIYALLKKGYYWSNLRDDVMQYTKT
         WQR YALLKKGY+W N+RDDVMQYTKT
Subjt:  AWQRIYALLKKGYYWSNLRDDVMQYTKT

A0A6J1DLQ6 uncharacterized protein LOC1110223206.3e-5379.07Show/hide
Query:  RSNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGH
        R+NQA DALS+KSE AALCMLAHLKASKLTGS+REAI+ +L++DP  Q IIQLA +G TRQF VE+DL FTKGN LYVPR+GNLRK L+GECHDTMWAGH
Subjt:  RSNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGH

Query:  AAWQRIYALLKKGYYWSNLRDDVMQYTKT
        A WQR YALLKKGYYW +LRDDVMQYTKT
Subjt:  AAWQRIYALLKKGYYWSNLRDDVMQYTKT

A0A6J1DLQ6 uncharacterized protein LOC1110223204.5e-2780.49Show/hide
Query:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQPTEV
        MKAVNS ALPI+G+AKRV +K+GTWSG VDFVI+RMDDFDVVL +KFLLE+KVIPMPLAKCLVVT SDP VV+TSIKQP+ V
Subjt:  MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQPTEV

A0A6J1DLQ6 uncharacterized protein LOC1110223202.3e-4770.31Show/hide
Query:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA
        SNQA DALS+K EHAA+C+LAHL+ S++ GSVR+ ++  L+ D   Q ++ LAK GKTRQFWVEDDL  TKGNRLYVPRAGNLRK L+ ECHDT+WAGH 
Subjt:  SNQATDALSQKSEHAALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHA

Query:  AWQRIYALLKKGYYWSNLRDDVMQYTKT
         WQR YALLKKGY+W N+RDDVMQYTKT
Subjt:  AWQRIYALLKKGYYWSNLRDDVMQYTKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCAGTTAACTCCGTGGCTCTCCCCATCGTAGGGATAGCAAAAAGGGTCCAACTGAAGATCGGGACATGGAGCGGCAAAGTGGACTTTGTAATTATTAGAATGGA
TGACTTCGACGTCGTGCTCGAAATGAAATTTCTTCTAGAGTACAAAGTCATCCCCATGCCCCTGGCGAAGTGTCTAGTTGTTACTGGATCTGATCCTACAGTTGTTCGGA
CGAGTATAAAACAACCAACCGAAGTTGTCCTTGAAACAAGCCCGATGGCAAGAGTACCTCGCCGAAGGTCAAACCAAGCAACAGACGCCCTTAGTCAAAAGAGCGAACAT
GCGGCCTTGTGCATGTTAGCTCATTTGAAAGCAAGCAAGTTGACGGGGTCTGTTCGTGAAGCCATTAAGGCACATCTGAAAGACGACCCAACAGTGCAAACAATCATTCA
GCTAGCAAAAGACGGGAAGACCCGTCAGTTTTGGGTCGAAGATGACCTCATTTTTACCAAAGGCAATCGTCTCTATGTTCCGCGAGCAGGAAACCTGAGGAAATTCCTGA
TGGGAGAATGCCATGACACCATGTGGGCTGGCCACGCTGCGTGGCAGAGAATTTATGCCCTACTGAAGAAAGGGTACTACTGGTCGAACTTGCGAGACGACGTTATGCAA
TATACCAAGACGTATCCCTTTAGGAGAGCGTATCCTTGGACTTCATCACCCACCTGCCCATGGTTGGAGAATCCGAAGCTATCCTTGTTATTGTCGATAAATTCTCCAAA
TACGCAACCTTTGTCCCAACTCCGAAGATGTGTTCCGCAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCAGTTAACTCCGTGGCTCTCCCCATCGTAGGGATAGCAAAAAGGGTCCAACTGAAGATCGGGACATGGAGCGGCAAAGTGGACTTTGTAATTATTAGAATGGA
TGACTTCGACGTCGTGCTCGAAATGAAATTTCTTCTAGAGTACAAAGTCATCCCCATGCCCCTGGCGAAGTGTCTAGTTGTTACTGGATCTGATCCTACAGTTGTTCGGA
CGAGTATAAAACAACCAACCGAAGTTGTCCTTGAAACAAGCCCGATGGCAAGAGTACCTCGCCGAAGGTCAAACCAAGCAACAGACGCCCTTAGTCAAAAGAGCGAACAT
GCGGCCTTGTGCATGTTAGCTCATTTGAAAGCAAGCAAGTTGACGGGGTCTGTTCGTGAAGCCATTAAGGCACATCTGAAAGACGACCCAACAGTGCAAACAATCATTCA
GCTAGCAAAAGACGGGAAGACCCGTCAGTTTTGGGTCGAAGATGACCTCATTTTTACCAAAGGCAATCGTCTCTATGTTCCGCGAGCAGGAAACCTGAGGAAATTCCTGA
TGGGAGAATGCCATGACACCATGTGGGCTGGCCACGCTGCGTGGCAGAGAATTTATGCCCTACTGAAGAAAGGGTACTACTGGTCGAACTTGCGAGACGACGTTATGCAA
TATACCAAGACGTATCCCTTTAGGAGAGCGTATCCTTGGACTTCATCACCCACCTGCCCATGGTTGGAGAATCCGAAGCTATCCTTGTTATTGTCGATAAATTCTCCAAA
TACGCAACCTTTGTCCCAACTCCGAAGATGTGTTCCGCAGAGATGA
Protein sequenceShow/hide protein sequence
MKAVNSVALPIVGIAKRVQLKIGTWSGKVDFVIIRMDDFDVVLEMKFLLEYKVIPMPLAKCLVVTGSDPTVVRTSIKQPTEVVLETSPMARVPRRRSNQATDALSQKSEH
AALCMLAHLKASKLTGSVREAIKAHLKDDPTVQTIIQLAKDGKTRQFWVEDDLIFTKGNRLYVPRAGNLRKFLMGECHDTMWAGHAAWQRIYALLKKGYYWSNLRDDVMQ
YTKTYPFRRAYPWTSSPTCPWLENPKLSLLLSINSPNTQPLSQLRRCVPQR