; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g17780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g17780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr1:12174485..12175173
RNA-Seq ExpressionMoc01g17780
SyntenyMoc01g17780
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042379.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-4653.48Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKNNPREQLE
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++TGR+PF+IV GRQPVLPH+VD+P+ GK+PQA NFTKEW+Q+ ++ARAYLEKASK MK      +E
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKNNPREQLE

Query:  VLPR------------------------------DTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGL
        VL +                              DT D  RN VT P + L+   DK+VE ILAER  R  RP R + E+LVKWK L
Subjt:  VLPR------------------------------DTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGL

KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-4652.26Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKN-------
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++TGR+PF+IV GRQPVLPH+VD+P+  K+PQA NFTKEWRQ+ ++ARAYLEKASK MK        
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKN-------

Query:  --------------NPREQLEVLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE
                       P +    LP                  +DT D  RN VTRP + L+ K DK+VE ILAER  R  RP R + E+LVKWK LP E
Subjt:  --------------NPREQLEVLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE

KAA0060349.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-4553.27Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++T R+PFKIV GRQPVLPH+VD+P+VGK+ QA NFTKEW+Q+ ++ARAYLEKASK MK   +  R+
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE

Query:  QLE------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE
         LE                   LP                  +DT D  RN VTRP + L+ K DK+VE ILAER  R  RP R + E+LVKWK LP E
Subjt:  QLE------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE

TYK01832.1 reverse transcriptase [Cucumis melo var. makuwa]7.7e-4550.97Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++TGR+PF+IV GR+PVLPH+VD+P+ GK+PQA NFTKEW+Q+T++ARAYLEKASK MK   +  R 
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE

Query:  QLE-------------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKW
         LE                         VLP                  +DT D  RN VTRP + L+ K DK+VE ILAER     RP R + E+LVKW
Subjt:  QLE-------------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKW

Query:  KGLPDE
        + LP E
Subjt:  KGLPDE

XP_022148918.1 uncharacterized protein LOC111017468 [Momordica charantia]1.4e-6571.05Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHM------KNN
        +LEEYLRHFIDARQKNWIQML+VAQ CFNCQKSTTTGRTPF+IVCGRQPVLPHVVD+PYVGKSPQAYNFTKEW QS EVA+AYLEKASKHM      K  
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHM------KNN

Query:  PRE------------------------QLEVLPRDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE
        P E                         L+   +DTVDPTRNE+TRP + LTNKVDKEVESILAERT RV  PRRD+QEFLVKWKGLPDE
Subjt:  PRE------------------------QLEVLPRDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE

TrEMBL top hitse value%identityAlignment
A0A5A7UY33 Reverse transcriptase4.4e-4652.26Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKN-------
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++TGR+PF+IV GRQPVLPH+VD+P+  K+PQA NFTKEWRQ+ ++ARAYLEKASK MK        
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKN-------

Query:  --------------NPREQLEVLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE
                       P +    LP                  +DT D  RN VTRP + L+ K DK+VE ILAER  R  RP R + E+LVKWK LP E
Subjt:  --------------NPREQLEVLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE

A0A5A7V3K4 Reverse transcriptase7.5e-4653.27Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++T R+PFKIV GRQPVLPH+VD+P+VGK+ QA NFTKEW+Q+ ++ARAYLEKASK MK   +  R+
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE

Query:  QLE------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE
         LE                   LP                  +DT D  RN VTRP + L+ K DK+VE ILAER  R  RP R + E+LVKWK LP E
Subjt:  QLE------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE

A0A5D3BSP5 Reverse transcriptase3.7e-4550.97Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++TGR+PF+IV GR+PVLPH+VD+P+ GK+PQA NFTKEW+Q+T++ARAYLEKASK MK   +  R 
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMK---NNPRE

Query:  QLE-------------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKW
         LE                         VLP                  +DT D  RN VTRP + L+ K DK+VE ILAER     RP R + E+LVKW
Subjt:  QLE-------------------------VLP------------------RDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKW

Query:  KGLPDE
        + LP E
Subjt:  KGLPDE

A0A5D3CW71 Reverse transcriptase4.4e-4653.48Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKNNPREQLE
        MLEEYLRHF++ARQKNW+Q+L+VAQFCFN Q S++TGR+PF+IV GRQPVLPH+VD+P+ GK+PQA NFTKEW+Q+ ++ARAYLEKASK MK      +E
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKNNPREQLE

Query:  VLPR------------------------------DTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGL
        VL +                              DT D  RN VT P + L+   DK+VE ILAER  R  RP R + E+LVKWK L
Subjt:  VLPR------------------------------DTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGL

A0A6J1D5E5 uncharacterized protein LOC1110174686.6e-6671.05Show/hide
Query:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHM------KNN
        +LEEYLRHFIDARQKNWIQML+VAQ CFNCQKSTTTGRTPF+IVCGRQPVLPHVVD+PYVGKSPQAYNFTKEW QS EVA+AYLEKASKHM      K  
Subjt:  MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHM------KNN

Query:  PRE------------------------QLEVLPRDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE
        P E                         L+   +DTVDPTRNE+TRP + LTNKVDKEVESILAERT RV  PRRD+QEFLVKWKGLPDE
Subjt:  PRE------------------------QLEVLPRDTVDPTRNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGAAGAGTACCTCCGCCACTTTATTGATGCTCGGCAAAAGAACTGGATCCAAATGCTCAATGTAGCTCAATTCTGTTTCAATTGCCAAAAGAGCACTACCACAGG
AAGAACCCCTTTCAAAATTGTGTGTGGGCGACAACCTGTGTTACCTCATGTTGTCGACTATCCATATGTGGGAAAGAGCCCTCAAGCCTACAATTTCACTAAGGAATGGC
GTCAATCCACCGAAGTGGCCAGAGCATACCTGGAGAAGGCGTCTAAACACATGAAAAATAATCCACGTGAGCAACTTGAAGTCTTACCACGCGACACCGTCGACCCTACA
CGAAACGAGGTAACTCGTCCAAAAGTCACGTTGACAAATAAGGTTGACAAAGAAGTTGAGTCAATCCTCGCTGAAAGAACATGCCGAGTAGGAAGACCACGAAGGGACGT
ACAGGAATTCCTAGTCAAGTGGAAAGGGCTCCCAGATGAAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGAAGAGTACCTCCGCCACTTTATTGATGCTCGGCAAAAGAACTGGATCCAAATGCTCAATGTAGCTCAATTCTGTTTCAATTGCCAAAAGAGCACTACCACAGG
AAGAACCCCTTTCAAAATTGTGTGTGGGCGACAACCTGTGTTACCTCATGTTGTCGACTATCCATATGTGGGAAAGAGCCCTCAAGCCTACAATTTCACTAAGGAATGGC
GTCAATCCACCGAAGTGGCCAGAGCATACCTGGAGAAGGCGTCTAAACACATGAAAAATAATCCACGTGAGCAACTTGAAGTCTTACCACGCGACACCGTCGACCCTACA
CGAAACGAGGTAACTCGTCCAAAAGTCACGTTGACAAATAAGGTTGACAAAGAAGTTGAGTCAATCCTCGCTGAAAGAACATGCCGAGTAGGAAGACCACGAAGGGACGT
ACAGGAATTCCTAGTCAAGTGGAAAGGGCTCCCAGATGAAAGATAA
Protein sequenceShow/hide protein sequence
MLEEYLRHFIDARQKNWIQMLNVAQFCFNCQKSTTTGRTPFKIVCGRQPVLPHVVDYPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKNNPREQLEVLPRDTVDPT
RNEVTRPKVTLTNKVDKEVESILAERTCRVGRPRRDVQEFLVKWKGLPDER