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Moc01g19190 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g19190
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr1:13278511..13283212
RNA-Seq ExpressionMoc01g19190
SyntenyMoc01g19190
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]7.0e-3164.49Show/hide
Query:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL
        IL IL T  +  SAS V+HLPLKTLAI PSLE ALYALVKYSSQLNDLQLLHGNHS  A         V+ L +                +ILGS+ES L
Subjt:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL

Query:  ALVASDYYDCQELVGLSWKAELHVMNYAEGSPLLTDKE
         LV SDYYDCQELVGLSWKAEL VMNYA GSPLLTDKE
Subjt:  ALVASDYYDCQELVGLSWKAELHVMNYAEGSPLLTDKE
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]2.2e-3276.15Show/hide
Query:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL
        IL IL T  +  SASC++HLPLKTLAI PSLE A+YALVKYSSQLNDLQLL GNHSGLAG TT DKVV +AL+V ELIDY+EII ITT+ +ILGSD S L
Subjt:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL

Query:  ALVASDYYD
        ALVASDYYD
Subjt:  ALVASDYYD
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like3.4e-3164.49Show/hide
Query:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL
        IL IL T  +  SAS V+HLPLKTLAI PSLE ALYALVKYSSQLNDLQLLHGNHS  A         V+ L +                +ILGS+ES L
Subjt:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL

Query:  ALVASDYYDCQELVGLSWKAELHVMNYAEGSPLLTDKE
         LV SDYYDCQELVGLSWKAEL VMNYA GSPLLTDKE
Subjt:  ALVASDYYDCQELVGLSWKAELHVMNYAEGSPLLTDKE
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein1.1e-3276.15Show/hide
Query:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL
        IL IL T  +  SASC++HLPLKTLAI PSLE A+YALVKYSSQLNDLQLL GNHSGLAG TT DKVV +AL+V ELIDY+EII ITT+ +ILGSD S L
Subjt:  ILFILATDTTLRSASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCL

Query:  ALVASDYYD
        ALVASDYYD
Subjt:  ALVASDYYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAATGCAATGGACCTGGCTATAACACAGGCTTCGACTTCGACTTTGATCGCTTACAAGCTCGGCTTGGGCGAAATTATGACCTTGAGGATGAGCTGAATTTTTC
TGAGCAGGATACCGGGTCTCTGACAGGATTCCTGATAAGGCCTCAACAACCATTTAAGGTAAGCTTGAATCACGACATGCTATCGTGGAGTTTGTCGGAATATGAGGCTA
AGCGAGACACATCTAGCGGGAGTCTGACATCCGAGCGAGAGGTCAGACCAATTCTATTTATCTTGGCAACCGACACTACACTGCGTAGTGCTTCATGTGTGAACCATCTT
CCTTTGAAAACTTTAGCCATCCCGCCTTCATTAGAACCTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGCGG
ACTTGCGGGTCATACCACTTTGGATAAGGTGGTCGTAATGGCTCTACAGGTACTGGAACTAATAGATTACATTGAAATAATTGAGATAACAACTCGGTATAAGATATTGG
GATCAGATGAAAGCTGTCTTGCTTTAGTTGCCTCCGACTATTATGATTGTCAGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGATGAATTATGCGGAGGGA
AGCCCTCTATTAACTGACAAGGAGGTGAGTTCACCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAATGCAATGGACCTGGCTATAACACAGGCTTCGACTTCGACTTTGATCGCTTACAAGCTCGGCTTGGGCGAAATTATGACCTTGAGGATGAGCTGAATTTTTC
TGAGCAGGATACCGGGTCTCTGACAGGATTCCTGATAAGGCCTCAACAACCATTTAAGGTAAGCTTGAATCACGACATGCTATCGTGGAGTTTGTCGGAATATGAGGCTA
AGCGAGACACATCTAGCGGGAGTCTGACATCCGAGCGAGAGGTCAGACCAATTCTATTTATCTTGGCAACCGACACTACACTGCGTAGTGCTTCATGTGTGAACCATCTT
CCTTTGAAAACTTTAGCCATCCCGCCTTCATTAGAACCTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGCGG
ACTTGCGGGTCATACCACTTTGGATAAGGTGGTCGTAATGGCTCTACAGGTACTGGAACTAATAGATTACATTGAAATAATTGAGATAACAACTCGGTATAAGATATTGG
GATCAGATGAAAGCTGTCTTGCTTTAGTTGCCTCCGACTATTATGATTGTCAGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGATGAATTATGCGGAGGGA
AGCCCTCTATTAACTGACAAGGAGGTGAGTTCACCTTAG
Protein sequenceShow/hide protein sequence
MRKCNGPGYNTGFDFDFDRLQARLGRNYDLEDELNFSEQDTGSLTGFLIRPQQPFKVSLNHDMLSWSLSEYEAKRDTSSGSLTSEREVRPILFILATDTTLRSASCVNHL
PLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLALVASDYYDCQELVGLSWKAELHVMNYAEG
SPLLTDKEVSSP