; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g22960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g22960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome locationchr1:15987602..15988549
RNA-Seq ExpressionMoc01g22960
SyntenyMoc01g22960
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]4.6e-2567.06Show/hide
Query:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK
        R   KQ  F PIP+SY ELL +L +SH +A+VP EPLQPPYPKWYDP   C+YHAGAVGHSTENC   K KVQ L+KAGWL+F K
Subjt:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK

KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]2.1e-2567.44Show/hide
Query:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK
        +R   KQ  F PIP+SY ELL +L +SH +A+VP EPLQPPYPKWYDP V C+YHAG VGHSTENC   K KVQ L+KAGWLKF K
Subjt:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]4.6e-2567.06Show/hide
Query:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK
        R   KQ  F PIP+SY ELL +L +SH +A+VP EPLQPPYPKWYDP   C+YHAGAVGHSTENC   K KVQ L+KAGWL+F K
Subjt:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]3.9e-8571.94Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPHNNSPPRLDPPLCQPTESFPQHNSSHEAQLSKKD
        +EELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVTVG TSQPNNLVEP+NNS PR+DPPLCQ  E FPQH+SSH+AQLSKK 
Subjt:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPHNNSPPRLDPPLCQPTESFPQHNSSHEAQLSKKD

Query:  QQAPTICQVEFTFQDGQTSKATYSEKLKGKAKENATNKNAEETARRWREANEQLTVPLIDKEP---QNKSFIKRKNKVQTVISKRKWRYQQGSAVYNPST
        QQ PT CQVEFTF+D QT K  YS+ LKG+ KEN T        +RW +A EQL VPLI+KEP    NKS IKRKNKV  V+SKRK +YQQG   Y+PST
Subjt:  QQAPTICQVEFTFQDGQTSKATYSEKLKGKAKENATNKNAEETARRWREANEQLTVPLIDKEP---QNKSFIKRKNKVQTVISKRKWRYQQGSAVYNPST

Query:  VPINSSDLQNDPHLRLSALPNDHKSRRQLKQESFHPIPISYIELLSELFQSHL
        VPINS  LQ+DP      LPN+H SRRQLK+ESFH IP SY ELLS+LFQ +L
Subjt:  VPINSSDLQNDPHLRLSALPNDHKSRRQLKQESFHPIPISYIELLSELFQSHL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.4e-2662.92Show/hide
Query:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSKEDG
        +R   KQ  F PIP++Y ELL +LFQ++ LA VPV+P+QPPYP+WYD    CDYHAGA+GHSTENCT+ K++VQ L+KAGWL F KE+G
Subjt:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSKEDG

TrEMBL top hitse value%identityAlignment
A0A5A7TUT4 Uncharacterized protein2.2e-2567.06Show/hide
Query:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK
        R   KQ  F PIP+SY ELL +L +SH +A+VP EPLQPPYPKWYDP   C+YHAGAVGHSTENC   K KVQ L+KAGWL+F K
Subjt:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK

A0A5A7ULI2 Retrotrans_gag domain-containing protein9.9e-2667.44Show/hide
Query:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK
        +R   KQ  F PIP+SY ELL +L +SH +A+VP EPLQPPYPKWYDP V C+YHAG VGHSTENC   K KVQ L+KAGWLKF K
Subjt:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK

A0A5A7V681 Retrotrans_gag domain-containing protein2.2e-2567.06Show/hide
Query:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK
        R   KQ  F PIP+SY ELL +L +SH +A+VP EPLQPPYPKWYDP   C+YHAGAVGHSTENC   K KVQ L+KAGWL+F K
Subjt:  RRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSK

A0A6J1DHS7 uncharacterized protein LOC1110210291.9e-8571.94Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPHNNSPPRLDPPLCQPTESFPQHNSSHEAQLSKKD
        +EELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVTVG TSQPNNLVEP+NNS PR+DPPLCQ  E FPQH+SSH+AQLSKK 
Subjt:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPHNNSPPRLDPPLCQPTESFPQHNSSHEAQLSKKD

Query:  QQAPTICQVEFTFQDGQTSKATYSEKLKGKAKENATNKNAEETARRWREANEQLTVPLIDKEP---QNKSFIKRKNKVQTVISKRKWRYQQGSAVYNPST
        QQ PT CQVEFTF+D QT K  YS+ LKG+ KEN T        +RW +A EQL VPLI+KEP    NKS IKRKNKV  V+SKRK +YQQG   Y+PST
Subjt:  QQAPTICQVEFTFQDGQTSKATYSEKLKGKAKENATNKNAEETARRWREANEQLTVPLIDKEP---QNKSFIKRKNKVQTVISKRKWRYQQGSAVYNPST

Query:  VPINSSDLQNDPHLRLSALPNDHKSRRQLKQESFHPIPISYIELLSELFQSHL
        VPINS  LQ+DP      LPN+H SRRQLK+ESFH IP SY ELLS+LFQ +L
Subjt:  VPINSSDLQNDPHLRLSALPNDHKSRRQLKQESFHPIPISYIELLSELFQSHL

A0A6J1E2J7 Ribonuclease H1.2e-2662.92Show/hide
Query:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSKEDG
        +R   KQ  F PIP++Y ELL +LFQ++ LA VPV+P+QPPYP+WYD    CDYHAGA+GHSTENCT+ K++VQ L+KAGWL F KE+G
Subjt:  SRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSKEDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATTGAATATTGAGCTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAGGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTCAACCTAACAATTTAGTCGAACCTCATAATAATTCACCACCTAGGT
TGGACCCACCTCTTTGTCAACCAACAGAGAGCTTCCCCCAGCATAATTCATCACATGAAGCTCAGCTTTCCAAGAAAGACCAACAAGCTCCTACAATCTGTCAGGTTGAA
TTCACATTCCAAGATGGACAAACATCAAAGGCCACATACTCAGAGAAGTTAAAAGGTAAAGCAAAAGAAAATGCTACCAATAAAAATGCTGAAGAAACTGCAAGGAGATG
GAGAGAGGCAAATGAACAACTGACAGTGCCTTTAATTGATAAAGAGCCACAAAATAAAAGCTTCATCAAAAGGAAAAATAAAGTCCAGACAGTAATCTCGAAGCGCAAGT
GGAGGTACCAACAAGGATCTGCGGTATACAATCCGTCTACAGTACCCATAAACTCATCGGATCTGCAGAATGACCCACATCTAAGATTGTCAGCATTACCTAACGATCAT
AAGAGTAGGAGGCAACTAAAGCAAGAGAGTTTTCATCCAATCCCAATATCCTATATCGAGCTGTTATCAGAATTATTTCAAAGTCATCTACTAGCTCTAGTACCTGTAGA
ACCATTGCAGCCACCTTATCCAAAGTGGTACGACCCGCAAGTCCACTGTGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACCAAAGCATAAAG
TGCAAGTTCTAATGAAGGCAGGATGGCTAAAGTTTTCAAAGGAAGATGGTCAACACATGAAGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATTGAATATTGAGCTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAGGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTCAACCTAACAATTTAGTCGAACCTCATAATAATTCACCACCTAGGT
TGGACCCACCTCTTTGTCAACCAACAGAGAGCTTCCCCCAGCATAATTCATCACATGAAGCTCAGCTTTCCAAGAAAGACCAACAAGCTCCTACAATCTGTCAGGTTGAA
TTCACATTCCAAGATGGACAAACATCAAAGGCCACATACTCAGAGAAGTTAAAAGGTAAAGCAAAAGAAAATGCTACCAATAAAAATGCTGAAGAAACTGCAAGGAGATG
GAGAGAGGCAAATGAACAACTGACAGTGCCTTTAATTGATAAAGAGCCACAAAATAAAAGCTTCATCAAAAGGAAAAATAAAGTCCAGACAGTAATCTCGAAGCGCAAGT
GGAGGTACCAACAAGGATCTGCGGTATACAATCCGTCTACAGTACCCATAAACTCATCGGATCTGCAGAATGACCCACATCTAAGATTGTCAGCATTACCTAACGATCAT
AAGAGTAGGAGGCAACTAAAGCAAGAGAGTTTTCATCCAATCCCAATATCCTATATCGAGCTGTTATCAGAATTATTTCAAAGTCATCTACTAGCTCTAGTACCTGTAGA
ACCATTGCAGCCACCTTATCCAAAGTGGTACGACCCGCAAGTCCACTGTGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACCAAAGCATAAAG
TGCAAGTTCTAATGAAGGCAGGATGGCTAAAGTTTTCAAAGGAAGATGGTCAACACATGAAGCACTAG
Protein sequenceShow/hide protein sequence
MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPHNNSPPRLDPPLCQPTESFPQHNSSHEAQLSKKDQQAPTICQVE
FTFQDGQTSKATYSEKLKGKAKENATNKNAEETARRWREANEQLTVPLIDKEPQNKSFIKRKNKVQTVISKRKWRYQQGSAVYNPSTVPINSSDLQNDPHLRLSALPNDH
KSRRQLKQESFHPIPISYIELLSELFQSHLLALVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSPKHKVQVLMKAGWLKFSKEDGQHMKH