; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g23310 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g23310
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr1:16333426..16335036
RNA-Seq ExpressionMoc01g23310
SyntenyMoc01g23310
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain
IPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ97017.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

TYK10423.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

TYK17386.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]4.8e-11543.71Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   ++ + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

TYK26407.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A5D3BD16 Ty3/gypsy retrotransposon protein1.8e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

A0A5D3CEX8 Ty3/gypsy retrotransposon protein1.8e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

A0A5D3D378 Gypsy/ty3 element polyprotein2.3e-11543.71Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   ++ + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

A0A5D3DD68 Ty3/gypsy retrotransposon protein1.8e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

A0A5D3DRT3 Ty3/gypsy retrotransposon protein1.8e-11543.91Show/hide
Query:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT
        G DR KFKK+EMP+F G DPD W+ R E YF++H L+E+EK  ++++S +G  L W+R+ E R RF SW+ L+ RL  RF+  +    CAR LAIKQEG+
Subjt:  GYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGT

Query:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL
        + EY++ FE LSAPLP + ++VL   F NGLDP++R EV +   +GLE ++  A L E+    +  A  G   ++ K+     KP  +  E   T  +TL
Subjt:  ISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEAGEGAVDRNAKAGAMGGKPTVRITEAQPTSKITL

Query:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC
                N+  ++         R++  ++R T+ E + RR++GLC++CEE  + GHRCKN++LR+ VV D    +LE+VE      E  + E    V  
Subjt:  --------NKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEVEPELEELE-RIEEKGKAVMC

Query:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL
         LN++VGLT PG  KLKGT++ +E+V+++DCGATHNFIS++LV+ LK+P +ET NYG++MGSG+AV+G GIC G+ + LP +++VEDFLP+EL ++D++L
Subjt:  RLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELNDLDVIL

Query:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF
        GM+WLQ  G M  DW ALTM+F  G  K  L+GDP+L RME+SLK L ++WQ  D+G+ V  RA+     +   +L + D V +  +E  QL  E+ D+F
Subjt:  GMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDV-QLPTEIHQLLNEYTDIF

Query:  Q
        +
Subjt:  Q

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G53705.1 aminoacyl-tRNA ligases;nucleotide binding;ATP binding2.3e-0643.4Show/hide
Query:  MGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELN--DLDVILGMKWLQSMGK
        MG G+ ++  G C G+ + + E  +VED+L ++LN  D DVILG KWL  +G+
Subjt:  MGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELN--DLDVILGMKWLQSMGK

AT1G53705.2 aminoacyl-tRNA ligases;nucleotide binding;ATP binding2.3e-0643.4Show/hide
Query:  MGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELN--DLDVILGMKWLQSMGK
        MG G+ ++  G C G+ + + E  +VED+L ++LN  D DVILG KWL  +G+
Subjt:  MGSGEAVKGHGICCGVVMELPEVTVVEDFLPIELN--DLDVILGMKWLQSMGK

AT3G29750.1 Eukaryotic aspartyl protease family protein3.2e-1633.56Show/hide
Query:  ELEELERIEEKGKAVMCRLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVT
        ELEELE+     +  M +L  ++ LT    ++  G +   +VVV +D GAT NFI + L   LK+P S T    +++G  + ++  G C G+ + + EV 
Subjt:  ELEELERIEEKGKAVMCRLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVT

Query:  VVEDFLPIEL--NDLDVILGMKWLQSMGKMETDWPALTMSFTRGSK
        + E+FL ++L   D+DVILG +WL  +G+   +W     SF+   +
Subjt:  VVEDFLPIEL--NDLDVILGMKWLQSMGKMETDWPALTMSFTRGSK

AT3G30770.1 Eukaryotic aspartyl protease family protein3.1e-1129.73Show/hide
Query:  IKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIEL--NDLDVILGMKWLQSMGKM
        ++  G +   +VVV++D GAT+NFIS  L   LK+P S T    +++G  + ++  G C G+ + + EV + E+FL ++L   D+DVILG    Q++ + 
Subjt:  IKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVEDFLPIEL--NDLDVILGMKWLQSMGKM

Query:  ETDWPALTMSFTRGSK-KSFLRGDPTLARMEVSLKRLSRSWQDTDEGY
           W     SF    +  +    D  L ++   +K  S   Q+  + Y
Subjt:  ETDWPALTMSFTRGSK-KSFLRGDPTLARMEVSLKRLSRSWQDTDEGY

AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding1.3e-0927.94Show/hide
Query:  LLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGTISEYIELFEALSAPLPHLTDEVL
        L   E YF  + + E+E+  +   + +G    W ++  K+N  TSW+  +  +    + + +         I+QEG++ EY E FEAL      L  + L
Subjt:  LLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEKRNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGTISEYIELFEALSAPLPHLTDEVL

Query:  ECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIED
        E  FL GL P ++  V   +P G+ Q++  A  +E+
Subjt:  ECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGTTTCATCGCAGACGTCACTAGTGGTACTGTTTCATCGATATCGCAGTTGGGAGAGTCGTCGACGCAAAAAGATAAACAGACAGCAAAGGCGACG
AGGATTATCCAAATCCAAGAAAACGGGTATGATCGAAATAAATTCAAGAAGGTGGAGATGCCAATCTTCACGGGTCCGGACCCGGATTCCTGGCTTTTACGGGTT
GAGAGGTATTTTGAGATTCACAAGCTATCAGAGGAGGAGAAGCATATAGTGTCTGTGATTAGTTTCGACGGGGTAGCCCTCGCGTGGTACCGTTATCATGAAAAG
AGGAATAGGTTCACCAGCTGGGAAAATTTGAGGATACGGTTATTGTTGCGATTTCAGAAATCCAAAGAGAAACGACAGTGTGCGCGGGTGTTGGCGATTAAACAG
GAAGGAACCATTTCGGAGTATATAGAGCTTTTCGAAGCTCTTTCGGCGCCACTTCCACACCTTACAGACGAGGTATTGGAGTGTACCTTCTTAAATGGATTGGAT
CCTCTGGTTCGTGTGGAAGTACTGTCGACGGAACCCATAGGATTGGAACAGATTCTGAAGCGAGCTCTCTTGATCGAGGACATAGCCACAGCGGTCCAGGAGGCA
GGGGAAGGAGCGGTAGATCGAAATGCGAAGGCGGGTGCCATGGGAGGGAAGCCAACTGTGAGAATCACTGAAGCCCAACCCACTAGCAAGATAACATTGAACAAA
CCAACCTCGGCAACGACTCCCGGTGTAACTCCAGTGGCCAGGAAGGAGCACACCTATAAACGATTAACGGAAGAGGAATATCGTAAACGAAGAGAGAGGGGACTC
TGCTTCAAATGTGAAGAGAAGTCTACCGTGGGGCATCGATGTAAAAACCAGCAACTACGTGTGATCGTTGTGCACGACGGAGATGAGACCGAGTTGGAGGAAGTA
GAACCGGAGTTGGAAGAGCTAGAGCGGATAGAGGAAAAGGGAAAGGCAGTGATGTGCCGTTTGAACACCATAGTAGGGTTGACGACGCCTGGAATGATCAAGCTA
AAAGGGACCTTGCAAGGCCGCGAGGTGGTGGTCCTCCTAGATTGTGGAGCCACCCATAATTTCATCTCCATAAGGCTGGTCAAGGAATTGAAAATTCCTCAGTCC
GAAACTTATAACTATGGTATTGTGATGGGATCAGGAGAAGCGGTTAAGGGGCATGGGATCTGTTGTGGAGTGGTGATGGAGCTGCCAGAGGTGACCGTTGTAGAA
GATTTTCTCCCAATTGAGTTAAACGACTTGGATGTGATATTGGGAATGAAGTGGCTCCAGTCCATGGGGAAGATGGAGACCGATTGGCCGGCCTTGACCATGTCT
TTCACGAGGGGCAGTAAAAAAAGTTTTCTACGGGGCGATCCAACACTAGCGCGAATGGAGGTGTCACTCAAACGACTCTCCAGATCTTGGCAAGACACGGATGAG
GGGTACTTCGTGGAGTTGCGGGCCCTAACTACTCATGGGGTAGAAACTGTGGGGGATCTAGAGATCAGAGATGATGTGCAACTACCGACCGAAATACATCAGCTC
CTTAATGAGTACACTGATATATTTCAAGGTACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAGGTTTCATCGCAGACGTCACTAGTGGTACTGTTTCATCGATATCGCAGTTGGGAGAGTCGTCGACGCAAAAAGATAAACAGACAGCAAAGGCGACG
AGGATTATCCAAATCCAAGAAAACGGGTATGATCGAAATAAATTCAAGAAGGTGGAGATGCCAATCTTCACGGGTCCGGACCCGGATTCCTGGCTTTTACGGGTT
GAGAGGTATTTTGAGATTCACAAGCTATCAGAGGAGGAGAAGCATATAGTGTCTGTGATTAGTTTCGACGGGGTAGCCCTCGCGTGGTACCGTTATCATGAAAAG
AGGAATAGGTTCACCAGCTGGGAAAATTTGAGGATACGGTTATTGTTGCGATTTCAGAAATCCAAAGAGAAACGACAGTGTGCGCGGGTGTTGGCGATTAAACAG
GAAGGAACCATTTCGGAGTATATAGAGCTTTTCGAAGCTCTTTCGGCGCCACTTCCACACCTTACAGACGAGGTATTGGAGTGTACCTTCTTAAATGGATTGGAT
CCTCTGGTTCGTGTGGAAGTACTGTCGACGGAACCCATAGGATTGGAACAGATTCTGAAGCGAGCTCTCTTGATCGAGGACATAGCCACAGCGGTCCAGGAGGCA
GGGGAAGGAGCGGTAGATCGAAATGCGAAGGCGGGTGCCATGGGAGGGAAGCCAACTGTGAGAATCACTGAAGCCCAACCCACTAGCAAGATAACATTGAACAAA
CCAACCTCGGCAACGACTCCCGGTGTAACTCCAGTGGCCAGGAAGGAGCACACCTATAAACGATTAACGGAAGAGGAATATCGTAAACGAAGAGAGAGGGGACTC
TGCTTCAAATGTGAAGAGAAGTCTACCGTGGGGCATCGATGTAAAAACCAGCAACTACGTGTGATCGTTGTGCACGACGGAGATGAGACCGAGTTGGAGGAAGTA
GAACCGGAGTTGGAAGAGCTAGAGCGGATAGAGGAAAAGGGAAAGGCAGTGATGTGCCGTTTGAACACCATAGTAGGGTTGACGACGCCTGGAATGATCAAGCTA
AAAGGGACCTTGCAAGGCCGCGAGGTGGTGGTCCTCCTAGATTGTGGAGCCACCCATAATTTCATCTCCATAAGGCTGGTCAAGGAATTGAAAATTCCTCAGTCC
GAAACTTATAACTATGGTATTGTGATGGGATCAGGAGAAGCGGTTAAGGGGCATGGGATCTGTTGTGGAGTGGTGATGGAGCTGCCAGAGGTGACCGTTGTAGAA
GATTTTCTCCCAATTGAGTTAAACGACTTGGATGTGATATTGGGAATGAAGTGGCTCCAGTCCATGGGGAAGATGGAGACCGATTGGCCGGCCTTGACCATGTCT
TTCACGAGGGGCAGTAAAAAAAGTTTTCTACGGGGCGATCCAACACTAGCGCGAATGGAGGTGTCACTCAAACGACTCTCCAGATCTTGGCAAGACACGGATGAG
GGGTACTTCGTGGAGTTGCGGGCCCTAACTACTCATGGGGTAGAAACTGTGGGGGATCTAGAGATCAGAGATGATGTGCAACTACCGACCGAAATACATCAGCTC
CTTAATGAGTACACTGATATATTTCAAGGTACATAG
Protein sequenceShow/hide protein sequence
MLEGFIADVTSGTVSSISQLGESSTQKDKQTAKATRIIQIQENGYDRNKFKKVEMPIFTGPDPDSWLLRVERYFEIHKLSEEEKHIVSVISFDGVALAWYRYHEK
RNRFTSWENLRIRLLLRFQKSKEKRQCARVLAIKQEGTISEYIELFEALSAPLPHLTDEVLECTFLNGLDPLVRVEVLSTEPIGLEQILKRALLIEDIATAVQEA
GEGAVDRNAKAGAMGGKPTVRITEAQPTSKITLNKPTSATTPGVTPVARKEHTYKRLTEEEYRKRRERGLCFKCEEKSTVGHRCKNQQLRVIVVHDGDETELEEV
EPELEELERIEEKGKAVMCRLNTIVGLTTPGMIKLKGTLQGREVVVLLDCGATHNFISIRLVKELKIPQSETYNYGIVMGSGEAVKGHGICCGVVMELPEVTVVE
DFLPIELNDLDVILGMKWLQSMGKMETDWPALTMSFTRGSKKSFLRGDPTLARMEVSLKRLSRSWQDTDEGYFVELRALTTHGVETVGDLEIRDDVQLPTEIHQL
LNEYTDIFQGT