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Moc01g27150 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g27150
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:19363111..19363683
RNA-Seq ExpressionMoc01g27150
SyntenyMoc01g27150
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]3.3e-5576.55Show/hide
Query:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ
        MK K+PPKFK P I +YD  TDPIDHLD Y E  DIYGITE+IRCRVFS TLTGSTR+WFQQLKRKSISSF+ELARAF+ QF GGWNRS  VAYLLTIKQ
Subjt:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ

Query:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF
        K TESLKDYVARFN+EKLQVEGLTDA+ LLVF+S V  +  + SF
Subjt:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]8.8e-4864.05Show/hide
Query:  EKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLT
        E+IMK K+PPKFK P + Q+D   D +DHLDAYRE  DIYG++E+++CRVFS TL+GS RVWF+QLKR SISSF+ LA+AF+ QF+GG +RS  VAYLLT
Subjt:  EKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLT

Query:  IKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF-KSSP
        IKQ+ TESL DYVARFNEEKLQVEGLT+A++L+ F+S +  +H   SF K +P
Subjt:  IKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF-KSSP

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]8.8e-4871.72Show/hide
Query:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ
        MK K  PKFK P IA+YD   DPIDHLDAYRE ADIY I E+IRCRVFS TLTGS R WF+QLKR SISSF+ELA AF+ QFVGG  +S  V YLLTIKQ
Subjt:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ

Query:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF
        K TESLK+YVARFNEEKLQVEGLTDA+AL+ FVS V  +  + SF
Subjt:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.2e-5968.18Show/hide
Query:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS
        E++ + HS K K FDLEEL+ QA+SPFTE+IM+ K+PPKFK P + Q+D  TDP+DHLDAYRE  DIYG++E++RCRVFS TL GS R+WF+QLKR SIS
Subjt:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS

Query:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF
        SF+ LARAF+ QFVGG  RS  VAYLLTIKQ+TTESL+DYVARFNEEKLQVEGLTDA++LL F+S V  +H   SF
Subjt:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.4e-5664.97Show/hide
Query:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS
        E++ + H+ K K FDLEEL+ QA+SPFTE+IM+ K+PPKFK P +  +D +T+P+DHLDAYRE  DIYG++++IRCRVFS TL GS R+WF+QLKR SIS
Subjt:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS

Query:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSFK
        SF+ LARAF+ QFVGG  RS  VAYLLTIKQ+T ESL DYVARFNEEKLQ+EGLTDA++LL F+S V  +H   SF+
Subjt:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSFK

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.6e-5576.55Show/hide
Query:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ
        MK K+PPKFK P I +YD  TDPIDHLD Y E  DIYGITE+IRCRVFS TLTGSTR+WFQQLKRKSISSF+ELARAF+ QF GGWNRS  VAYLLTIKQ
Subjt:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ

Query:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF
        K TESLKDYVARFN+EKLQVEGLTDA+ LLVF+S V  +  + SF
Subjt:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF

A0A6J1D7D2 uncharacterized protein LOC1110183074.3e-4864.05Show/hide
Query:  EKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLT
        E+IMK K+PPKFK P + Q+D   D +DHLDAYRE  DIYG++E+++CRVFS TL+GS RVWF+QLKR SISSF+ LA+AF+ QF+GG +RS  VAYLLT
Subjt:  EKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLT

Query:  IKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF-KSSP
        IKQ+ TESL DYVARFNEEKLQVEGLT+A++L+ F+S +  +H   SF K +P
Subjt:  IKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF-KSSP

A0A6J1DWY0 uncharacterized protein LOC1110252931.1e-5968.18Show/hide
Query:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS
        E++ + HS K K FDLEEL+ QA+SPFTE+IM+ K+PPKFK P + Q+D  TDP+DHLDAYRE  DIYG++E++RCRVFS TL GS R+WF+QLKR SIS
Subjt:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS

Query:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF
        SF+ LARAF+ QFVGG  RS  VAYLLTIKQ+TTESL+DYVARFNEEKLQVEGLTDA++LL F+S V  +H   SF
Subjt:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF

A0A6J1DZ49 uncharacterized protein LOC1110248514.3e-4871.72Show/hide
Query:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ
        MK K  PKFK P IA+YD   DPIDHLDAYRE ADIY I E+IRCRVFS TLTGS R WF+QLKR SISSF+ELA AF+ QFVGG  +S  V YLLTIKQ
Subjt:  MKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSISSFRELARAFIIQFVGGWNRSNLVAYLLTIKQ

Query:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF
        K TESLK+YVARFNEEKLQVEGLTDA+AL+ FVS V  +  + SF
Subjt:  KTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSF

A0A6J1E1E7 uncharacterized protein LOC1110255486.6e-5764.97Show/hide
Query:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS
        E++ + H+ K K FDLEEL+ QA+SPFTE+IM+ K+PPKFK P +  +D +T+P+DHLDAYRE  DIYG++++IRCRVFS TL GS R+WF+QLKR SIS
Subjt:  ETTNQTHS-KLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS

Query:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSFK
        SF+ LARAF+ QFVGG  RS  VAYLLTIKQ+T ESL DYVARFNEEKLQ+EGLTDA++LL F+S V  +H   SF+
Subjt:  SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAAGGAGTTGGGGAGACAACCAACCAGACACATAGCAAACTGAAGAAGTTTGATCTCGAGGAACTGGTAAAGCAAGCAGAGTCGCCCTTTACAGAGAAA
ATAATGAAAGGAAAAATTCCTCCGAAGTTCAAGCCGCCTGACATCGCACAATACGACAGCTTGACAGATCCCATCGATCACCTCGACGCATACAGGGAATCGGCA
GATATTTATGGCATAACTGAAAGCATTAGATGCAGAGTGTTTTCTCTCACCTTGACTGGCTCAACACGCGTCTGGTTCCAACAGTTAAAAAGAAAATCAATCTCA
AGCTTTAGGGAATTGGCAAGAGCATTTATCATCCAATTCGTCGGAGGATGGAATAGAAGCAATCTTGTAGCATACCTACTAACTATTAAGCAAAAGACAACAGAA
AGCCTCAAAGACTATGTGGCTCGGTTCAATGAAGAAAAGCTACAAGTGGAGGGTTTGACAGATGCAATGGCGCTGCTAGTCTTTGTATCTAGTGTGAACTCCAAG
CACTTTCTCGGAAGCTTTAAGTCGAGTCCAAAGATACATAAGTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGAAGGAGTTGGGGAGACAACCAACCAGACACATAGCAAACTGAAGAAGTTTGATCTCGAGGAACTGGTAAAGCAAGCAGAGTCGCCCTTTACAGAGAAA
ATAATGAAAGGAAAAATTCCTCCGAAGTTCAAGCCGCCTGACATCGCACAATACGACAGCTTGACAGATCCCATCGATCACCTCGACGCATACAGGGAATCGGCA
GATATTTATGGCATAACTGAAAGCATTAGATGCAGAGTGTTTTCTCTCACCTTGACTGGCTCAACACGCGTCTGGTTCCAACAGTTAAAAAGAAAATCAATCTCA
AGCTTTAGGGAATTGGCAAGAGCATTTATCATCCAATTCGTCGGAGGATGGAATAGAAGCAATCTTGTAGCATACCTACTAACTATTAAGCAAAAGACAACAGAA
AGCCTCAAAGACTATGTGGCTCGGTTCAATGAAGAAAAGCTACAAGTGGAGGGTTTGACAGATGCAATGGCGCTGCTAGTCTTTGTATCTAGTGTGAACTCCAAG
CACTTTCTCGGAAGCTTTAAGTCGAGTCCAAAGATACATAAGTGCTAA
Protein sequenceShow/hide protein sequence
MIEGVGETTNQTHSKLKKFDLEELVKQAESPFTEKIMKGKIPPKFKPPDIAQYDSLTDPIDHLDAYRESADIYGITESIRCRVFSLTLTGSTRVWFQQLKRKSIS
SFRELARAFIIQFVGGWNRSNLVAYLLTIKQKTTESLKDYVARFNEEKLQVEGLTDAMALLVFVSSVNSKHFLGSFKSSPKIHKC