CuGenDBv2

Gene ID	Moc01g27800
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Translation initiation factor IF-2, putative isoform 1
Genome location	chr1:19769499..19772148
RNA-Seq Expression	Moc01g27800
Synteny	Moc01g27800
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]

8.0e-107

85.48

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSP+REA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEEKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAGM+S NGFEFSSKSVKTN FNVENLQIP+F LEEPSD+M+LGMPD+LQTPGV NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

KAG7034170.1 hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.4e-105

84.15

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEEKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPG-----VCN
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAGM+S NGFEFSSKSVKTN FNVENLQIP+F LEEPSD+M+LGMPD+LQTPG     V N
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPG-----VCN

Query:  QRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        QRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  QRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_022133198.1 uncharacterized protein LOC111005854 [Momordica charantia]

2.9e-125

100

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_022978547.1 uncharacterized protein LOC111478496 [Cucurbita maxima]

1.1e-103

84.17

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFF EKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAG++S NGFEFSSKSVKTN FNVENLQIP+FVLEEPSD+M+LGMPD+LQTPG  NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        GMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

XP_023543921.1 uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]

6.8e-106

85.06

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEEKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWK+   ELHT PADGIDIHASLLHRLS AYPNCSAGM+S NGFEFSSKSVKTN FNVENLQIP+F LEEPSD+M+LGMPD+LQTPGV NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+E+NMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KK81 Uncharacterized protein

2.9e-102

84.39

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKT KK SPSP+ EA++E+         ++EDVERHAAAIRAIRDVEIERLIT LRLLRSYFNKEQLQTP+LQFFEEKLP LSIS TGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKD   EL T PADGIDIHASLLHRLSIAYPNCSAGM+S NGFEFSSKSVKTN F VENLQIP+FVLEEPSD+++LGMPDI QTPGV NQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A1S3B1M1 uncharacterized protein LOC103485008

2.2e-102

84.81

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKT KK +PSPV EA++E+         ++EDVERHAAAIRAIRDVEI RLITELRLLRSYFNKEQLQTP+LQFFEEKLP LSIS TGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKD   EL T PADGIDIHASLLHRLSIAYPNCSAGM+S NGFEFSSKSVKTN F VENLQIP+F LEEPSD+M+LGMPDILQTPGV NQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A5D3CLG2 Uncharacterized protein

2.2e-102

84.81

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKT KK +PSPV EA++E+         ++EDVERHAAAIRAIRDVEI RLITELRLLRSYFNKEQLQTP+LQFFEEKLP LSIS TGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKD   EL T PADGIDIHASLLHRLSIAYPNCSAGM+S NGFEFSSKSVKTN F VENLQIP+F LEEPSD+M+LGMPDILQTPGV NQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A6J1BYE7 uncharacterized protein LOC111005854

1.4e-125

100

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A6J1ILD3 uncharacterized protein LOC111478496

5.2e-104

84.17

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFF EKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAG++S NGFEFSSKSVKTN FNVENLQIP+FVLEEPSD+M+LGMPD+LQTPG  NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        GMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G39630.1 unknown protein

8.7e-51

49.57

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        M +RKAK+  K       R  E   + EE+     +E+VER  AAIRAIRDVEIE+++T LRLLRSYF +EQL TP+L FF+E LP+LSIS   E GEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        ++W+D  G+      +G+D++ S+L RLS+ + +  +   S+ G++    +VK N    +N Q+ + V +  S++ ML   D  QTPGV  QRLS GMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE
        KT RLPK GEM++S+HGSPLGVYKED NM AI+E
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE

Sequences

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CDS sequence

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ATGGCGAGGCGAAAGGCGAAGAAAACAGCTAAGAAGTTGAGCCCTTCTCCTGTGCGTGAAGCAGAGAATGAGTCAAAACCTGAGGAGCAAGCACCTTTGGTGTCC
AACGAGGATGTTGAGCGGCATGCTGCTGCAATACGTGCCATTCGGGATGTGGAAATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAA
GAGCAATTGCAAACTCCTATATTGCAATTTTTCGAAGAAAAACTTCCAAACTTGTCCATTTCAGCAACAGGCGAACAAGGGGAAATAGAAGTGCAATGGAAGGAT
GCAGCGGGAGAATTACACACTAAGCCTGCTGACGGAATAGACATACATGCTTCTCTCCTGCATCGCTTGTCCATAGCTTATCCTAACTGCTCTGCCGGAATGCAA
TCTATGAACGGTTTTGAATTTTCCAGTAAATCAGTGAAAACAAATGCTTTCAATGTCGAGAACTTGCAAATTCCGAGCTTCGTTTTGGAGGAGCCTTCGGATAGT
ATGATGCTTGGCATGCCAGACATTCTCCAAACTCCCGGGGTATGCAACCAAAGATTGTCCATTGGGATGACACCGAAAACCCGAAGGCTGCCGAAGCCTGGTGAG
ATGCTTGTATCCATCCATGGATCTCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATACATGAATCAGAAGAGGGTTGA

mRNA sequence

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Protein sequence

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MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIEVQWKD
AAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTPKTRRLPKPGE
MLVSIHGSPLGVYKEDNMEAIHESEEG

Moc01g27800 (gene) of Bitter gourd (OHB3-1) v2 genome