; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g31400 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g31400
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionpre-mRNA-splicing factor SYF1
Genome locationchr1:22032230..22032875
RNA-Seq ExpressionMoc01g31400
SyntenyMoc01g31400
Gene Ontology termsGO:0000349 - generation of catalytic spliceosome for first transesterification step (biological process)
GO:0000974 - Prp19 complex (cellular component)
GO:0071007 - U2-type catalytic step 2 spliceosome (cellular component)
GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR003107 - HAT (Half-A-TPR) repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR045075 - Pre-mRNA-splicing factor Syf1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134724.2 pre-mRNA-splicing factor SYF1 [Cucumis sativus]1.0e-8798.17Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA+APFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

XP_022142130.1 pre-mRNA-splicing factor SYF1 [Momordica charantia]5.5e-89100Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

XP_022977433.1 pre-mRNA-splicing factor SYF1 [Cucurbita maxima]2.3e-8797.56Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA++PFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

XP_023543705.1 pre-mRNA-splicing factor SYF1 [Cucurbita pepo subsp. pepo]2.3e-8797.56Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA++PFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

XP_038881960.1 pre-mRNA-splicing factor SYF1 [Benincasa hispida]1.0e-8798.17Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA+APFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

TrEMBL top hitse value%identityAlignment
A0A0A0KLE6 TPR_REGION domain-containing protein5.0e-8898.17Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA+APFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

A0A5D3CNV4 Pre-mRNA-splicing factor SYF12.5e-8797.56Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA+APFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPI HSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

A0A6J1CK21 pre-mRNA-splicing factor SYF12.6e-89100Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

A0A6J1GEX2 pre-mRNA-splicing factor SYF11.1e-8797.56Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA++PFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

A0A6J1IPZ1 pre-mRNA-splicing factor SYF11.1e-8797.56Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARA++PFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIWIMYLQTLTNQK VTRTRRTFDRALCALPVTQHDRIWEPYL+FVSQKGIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

SwissProt top hitse value%identityAlignment
A1Z9G2 Pre-mRNA-splicing factor syf1 homolog7.5e-4153.99Show/hide
Query:  SISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKM
        S++ ++    +D+ YEEE+LRN +S+K W RY+  +A AP     ++YERALK LPGSYK+W+ YLR R   VR    T   YE +N+ FERALV MHKM
Subjt:  SISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKM

Query:  PRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        PRIW+ Y   +T+Q  +TRTR  FDRAL ALP+TQH RIW  YL FV +  +P ET+LRVYRR
Subjt:  PRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

Q54Z08 Pre-mRNA-splicing factor SYF14.9e-4050.63Show/hide
Query:  LYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIWI
        + PS DDL YEE++ +NP+S+  W RYL  +  +P K+R  IYERA++ LP SYK+W+ YL ER   +R   I  + +E +N  FER+LV + KMPRIWI
Subjt:  LYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIWI

Query:  MYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
         Y + L  Q+ +T TR+TFDRAL ALPVTQH RIW  Y  F+ ++ IP  T +RVY+R
Subjt:  MYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

Q99PK0 Pre-mRNA-splicing factor SYF11.7e-4054.09Show/hide
Query:  DLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIW
        DL   ++DL YEEE++RN FS+K W RY+  +  AP  +   +YERALK LP SYKLWY YL+ R   V++  +T   YE +NN  ERA V MHKMPR+W
Subjt:  DLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIW

Query:  IMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        + Y Q L +Q  VT TRRTFDRAL ALP+TQH RIW  YL F+    +P ET++R YRR
Subjt:  IMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

Q9DCD2 Pre-mRNA-splicing factor SYF11.7e-4054.09Show/hide
Query:  DLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIW
        DL   ++DL YEEE++RN FS+K W RY+  +  AP  +   +YERALK LP SYKLWY YL+ R   V++  +T   YE +NN  ERA V MHKMPR+W
Subjt:  DLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIW

Query:  IMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        + Y Q L +Q  VT TRRTFDRAL ALP+TQH RIW  YL F+    +P ET++R YRR
Subjt:  IMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

Q9HCS7 Pre-mRNA-splicing factor SYF11.7e-4054.09Show/hide
Query:  DLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIW
        DL   ++DL YEEE++RN FS+K W RY+  +  AP  +   +YERALK LP SYKLWY YL+ R   V++  +T   YE +NN  ERA V MHKMPR+W
Subjt:  DLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIW

Query:  IMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        + Y Q L +Q  VT TRRTFDRAL ALP+TQH RIW  YL F+    +P ET++R YRR
Subjt:  IMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR

Arabidopsis top hitse value%identityAlignment
AT5G28740.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.5e-8487.8Show/hide
Query:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK
        M+IS+DLYPSQ+DLLYEEELLRN FSLKLWWRYLIA+A++PFKKRFIIYERALKALPGSYKLWYAYLRERLD+VRNLP+TH QY++LNNTFER LVTMHK
Subjt:  MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHK

Query:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR
        MPRIW+MYLQTLT Q+ +TRTRRTFDRALCALPVTQHDRIWEPYL+FVSQ GIPIETSLRVYRR
Subjt:  MPRIWIMYLQTLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCTCAAGATTTATATCCATCGCAAGATGACCTCCTCTACGAAGAAGAGCTTCTTCGAAATCCTTTCAGTTTGAAGTTGTGGTGGCGCTACCTCATAGCACG
AGCTGACGCACCATTCAAGAAGCGATTCATTATTTACGAGCGAGCTCTCAAGGCCCTGCCAGGTAGCTATAAGTTATGGTATGCATATCTGCGAGAACGACTCGATCTGG
TACGAAATCTTCCCATTACTCATTCTCAGTATGAAACTCTCAACAACACGTTTGAACGAGCGCTGGTGACCATGCATAAAATGCCAAGAATATGGATAATGTACCTGCAG
ACGTTGACAAACCAGAAATCAGTGACCCGAACGCGTCGGACGTTCGACCGAGCCCTCTGTGCTCTTCCAGTGACACAACATGATCGAATTTGGGAGCCTTACCTCATTTT
TGTAAGCCAAAAGGGGATTCCAATTGAGACGTCGCTTAGAGTTTATCGAAGGGGAAGACCAAGCACCGGCTGTGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCTCAAGATTTATATCCATCGCAAGATGACCTCCTCTACGAAGAAGAGCTTCTTCGAAATCCTTTCAGTTTGAAGTTGTGGTGGCGCTACCTCATAGCACG
AGCTGACGCACCATTCAAGAAGCGATTCATTATTTACGAGCGAGCTCTCAAGGCCCTGCCAGGTAGCTATAAGTTATGGTATGCATATCTGCGAGAACGACTCGATCTGG
TACGAAATCTTCCCATTACTCATTCTCAGTATGAAACTCTCAACAACACGTTTGAACGAGCGCTGGTGACCATGCATAAAATGCCAAGAATATGGATAATGTACCTGCAG
ACGTTGACAAACCAGAAATCAGTGACCCGAACGCGTCGGACGTTCGACCGAGCCCTCTGTGCTCTTCCAGTGACACAACATGATCGAATTTGGGAGCCTTACCTCATTTT
TGTAAGCCAAAAGGGGATTCCAATTGAGACGTCGCTTAGAGTTTATCGAAGGGGAAGACCAAGCACCGGCTGTGGCTAG
Protein sequenceShow/hide protein sequence
MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQ
TLTNQKSVTRTRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRRGRPSTGCG