; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g32960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g32960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA-binding protein DDB_G0278111
Genome locationchr1:23155746..23158452
RNA-Seq ExpressionMoc01g32960
SyntenyMoc01g32960
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR002836 - PDCD5-like
IPR036883 - PDCD5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439666.1 PREDICTED: DNA-binding protein DDB_G0278111 [Cucumis melo]5.2e-5296.09Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M+DPELEAIRQRRMQELM+QRGMGSQNN EQQKAQE+ARSEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022142304.1 DNA-binding protein DDB_G0278111 isoform X1 [Momordica charantia]2.5e-54100Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022925642.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata]8.9e-5295.31Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELM+QRG+GSQNN EQQKAQE+A+SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022926831.1 DNA-binding protein DDB_G0278111-like [Cucurbita moschata]1.2e-5195.31Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELM+QRGMGSQ+N EQQKAQE+A+SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_038881892.1 DNA-binding protein DDB_G0278111 [Benincasa hispida]6.1e-5397.66Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELM+QRGMGSQNN EQQKAQE+ARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

TrEMBL top hitse value%identityAlignment
A0A1S3AZB0 DNA-binding protein DDB_G02781112.5e-5296.09Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M+DPELEAIRQRRMQELM+QRGMGSQNN EQQKAQE+ARSEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1CKK4 DNA-binding protein DDB_G0278111 isoform X11.2e-54100Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1EC84 DNA-binding protein DDB_G0278111-like isoform X24.3e-5295.31Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELM+QRG+GSQNN EQQKAQE+A+SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1IVC3 DNA-binding protein DDB_G0278111-like isoform X24.3e-5295.31Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELM+QRG+GSQNN EQQKAQE+A+SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1KTQ8 DNA-binding protein DDB_G0278111-like5.6e-5295.31Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELM+QRGMGSQ+N EQQKAQE+A+SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

SwissProt top hitse value%identityAlignment
O13929 Uncharacterized protein C23C4.09c9.0e-1543.31Show/hide
Query:  DPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D EL+AIRQ R+ +L ++ G    N +    + +  +   +E RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LL
Subjt:  DPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTK--QTKVTIQRRRSVLEDD
        E+I+ + +K  +TK+ I RR    EDD
Subjt:  EQINNQTTK--QTKVTIQRRRSVLEDD

O14737 Programmed cell death protein 51.2e-1440.62Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M D ELEA+R++R+ EL ++ G           AQ++A+    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        +L++++ QT K T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

P56812 Programmed cell death protein 51.2e-1440.62Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M D ELEA+R++R+ EL ++ G           AQ++A+    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        +LE+++ QT K+T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

Q54YS0 DNA-binding protein DDB_G02781115.6e-1750Show/hide
Query:  QRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTT
        ++ +Q+ +SQ   G   + E Q+ QE  R EA ERRQ +L QIL+  ARERL+RI +VKPEK+R +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ T
Subjt:  QRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTT

Query:  KQTKVTIQRRRSVLEDDD
        K+T +T++RR   +EDDD
Subjt:  KQTKVTIQRRRSVLEDDD

Q5RBT0 Programmed cell death protein 51.2e-1440.62Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M D ELEA+R++R+ EL ++ G           AQ++A+    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLEDDD
        +L++++ QT K T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLEDDD

Arabidopsis top hitse value%identityAlignment
AT1G29850.1 double-stranded DNA-binding family protein1.7e-4582.44Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGM---GSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
        M DPELEAIRQRRMQELM+++GM   G+Q N EQ+K QEDA+ EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
Subjt:  MDDPELEAIRQRRMQELMSQRGM---GSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER

Query:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        LITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.2 double-stranded DNA-binding family protein2.3e-4581.82Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGM----GSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE
        M DPELEAIRQRRMQELM+++GM    G+Q N EQ+K QEDA+ EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE
Subjt:  MDDPELEAIRQRRMQELMSQRGM----GSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE

Query:  RLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        RLITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  RLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.3 double-stranded DNA-binding family protein4.7e-4380.16Show/hide
Query:  MDDPELEAIRQRRMQELMSQRGM---GSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
        M DPELEAIRQRRMQELM+++GM   G+Q N EQ+K QEDA+ EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
Subjt:  MDDPELEAIRQRRMQELMSQRGM---GSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER

Query:  LITLLEQINNQTTKQTKVTIQRRRSV
        LITLLEQIN+QTTKQTKVT+    +V
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATCCTGAACTAGAAGCAATCAGGCAAAGAAGAATGCAGGAACTCATGTCCCAGCGAGGCATGGGAAGCCAAAATAATTCCGAACAACAGAAGGCCCAGGAAGA
TGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTTTGTCAATGCAAGCAAGAGAAAGACTTGCTCGAATTGCTTTGGTGAAACCTGAGAAGGCAA
GAGGTGTTGAAGATGTTATATTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTATCGGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAAACCACG
AAACAGACTAAAGTCACTATACAGAGGCGTCGAAGCGTTCTCGAGGATGATGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGATCCTGAACTAGAAGCAATCAGGCAAAGAAGAATGCAGGAACTCATGTCCCAGCGAGGCATGGGAAGCCAAAATAATTCCGAACAACAGAAGGCCCAGGAAGA
TGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTTTGTCAATGCAAGCAAGAGAAAGACTTGCTCGAATTGCTTTGGTGAAACCTGAGAAGGCAA
GAGGTGTTGAAGATGTTATATTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTATCGGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAAACCACG
AAACAGACTAAAGTCACTATACAGAGGCGTCGAAGCGTTCTCGAGGATGATGATTAG
Protein sequenceShow/hide protein sequence
MDDPELEAIRQRRMQELMSQRGMGSQNNSEQQKAQEDARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTT
KQTKVTIQRRRSVLEDDD