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Moc01g33590 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g33590
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionF-box protein SKIP19-like
Genome locationchr1:23671296..23671694
RNA-Seq ExpressionMoc01g33590
SyntenyMoc01g33590
Gene Ontology termsNA
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581459.1 F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]6.8e-3161.94Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD
        D+ ALAIAENMPNL HLQIF NSLTNRGL+AILDGCPDLESLDLR CFNLNL G LG KC+E+IK+LRLPHDPTDD  Y +        + EDY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY
        SD D     + D+Y YE    SDFS  DY D ++
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY

KAG7034751.1 Protein BREAST CANCER SUSCEPTIBILITY 1-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.2e-3062.88Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD
        D+ ALAIAENMPNL HLQIF NSLTNRGL+AILDGCPDLESLDLR CFNLNL G LG KC+E+IK+LRLPHDPTDD  + +        + EDY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADF
        SD D     + D+Y YE    SDFS  DY DF
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADF

XP_022146630.1 F-box protein SKIP19-like [Momordica charantia]8.9e-3160.29Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY--------DSHSHGEDYPLTF
        D +A+AIAENMPNL +LQIF +SLT+RGLQAILDGCPDLESLDLR CFNL+LVG LG +CAERIK LRLPHDPTDD  +        D  S  EDYP  F
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY--------DSHSHGEDYPLTF

Query:  YDSDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY
         D D     +   D+  YE    S+FS  DYADF++
Subjt:  YDSDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY

XP_022925897.1 F-box protein SKIP19-like isoform X1 [Cucurbita moschata]2.0e-3061.19Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD
        D+ ALAIAENMPNL HLQIF NSLTNRGL+AILDGCPDLESLDLR CFNLNL G LG KC+E+IK+LRLPHDPTDD  + +        + EDY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY
        SD D     + D+Y YE    SDFS  DY D ++
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY

XP_023543623.1 F-box protein SKIP19-like [Cucurbita pepo subsp. pepo]2.0e-3061.19Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD
        D+ ALAIAENMPNL HLQIF NSLTNRGL+AILDGCPDLESLDLR CFNLNL G LG KC+E+IK+LRLPHDPTDD  + +        + EDY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY
        SD D     + D+Y YE    SDFS  DY D ++
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY

TrEMBL top hitse value%identityAlignment
A0A0A0KIS9 F-box domain-containing protein6.9e-2958.21Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY------DSHSHGEDYPLTFYD
        D+ ALAIAENMPNL HL IF N+LTN+GL+AILDGC  LESLDLRHCFNLNL G LG KC+E+IK LRLPHDPTDD  +      D  ++ +DY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY------DSHSHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY
        SD D     + D+Y YE    SDFS  DY D ++
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY

A0A6J1CXS5 F-box protein SKIP19-like4.3e-3160.29Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY--------DSHSHGEDYPLTF
        D +A+AIAENMPNL +LQIF +SLT+RGLQAILDGCPDLESLDLR CFNL+LVG LG +CAERIK LRLPHDPTDD  +        D  S  EDYP  F
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY--------DSHSHGEDYPLTF

Query:  YDSDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY
         D D     +   D+  YE    S+FS  DYADF++
Subjt:  YDSDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY

A0A6J1ECV6 F-box protein SKIP19-like isoform X19.6e-3161.19Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD
        D+ ALAIAENMPNL HLQIF NSLTNRGL+AILDGCPDLESLDLR CFNLNL G LG KC+E+IK+LRLPHDPTDD  + +        + EDY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY
        SD D     + D+Y YE    SDFS  DY D ++
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSDCDYADFFY

A0A6J1EGI8 F-box protein SKIP19-like isoform X21.6e-3063.49Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD
        D+ ALAIAENMPNL HLQIF NSLTNRGL+AILDGCPDLESLDLR CFNLNL G LG KC+E+IK+LRLPHDPTDD  + +        + EDY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSD
        SD D     + D+Y YE    SDFSD
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSD

A0A6J1ILH5 F-box protein SKIP19-like1.6e-3063.49Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD
        D+ ALAIAENMPNL HLQIF NSLTNRGL+AILDGCPDLESLDLR CFNLNL G LG KC+E+IK+LRLPHDPTDD  + +        + EDY   F  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSH------SHGEDYPLTFYD

Query:  SDDDYDNYNNYDNYCYESFWDSDFSD
        SD D     + D+Y YE    SDFSD
Subjt:  SDDDYDNYNNYDNYCYESFWDSDFSD

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 225.1e-2152.73Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY----DSHS----HGEDYPLTF
        D +ALAIA+ MP L HLQ+  N LTN GL AILDGCP LE LDLR CFN+NL G L  +C ERIK  R P+D  DD  Y    D+ S     GE+     
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY----DSHS----HGEDYPLTF

Query:  YDSDDDYDNY
        Y SDD    Y
Subjt:  YDSDDDYDNY

Q9M0U7 Putative F-box protein At4g054751.6e-2263.75Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLES-LDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY
        D++ALAIAE+MP L HLQ+  N LTN GL AILDGCP LE  LD+R CFN+NLVG L  +C +RIK LR PHD T D  Y
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLES-LDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY

Q9M0U8 Putative F-box/LRR-repeat protein 217.8e-2261.25Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYD
        D++ALAIAE+MP LHHLQ+  N LTN GL AILDGCP LE LD+R CF ++LVG L  +C E IK LR P D T D  Y+
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYD

Q9M0U9 F-box protein SKIP193.0e-2146.51Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSHSHGEDYPLTFYD---SDD
        D++ALAIAE MP L HLQ+  N L++ GL AILD C +LE LDLR CFN+NLVG L  +C E +K +R P+D   DI   S    + Y  +  D    DD
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSHSHGEDYPLTFYD---SDD

Query:  DYDNYNNYDNYCYESFWDSDFSDCDYADF
        D++ Y       Y+    SDFSD D  DF
Subjt:  DYDNYNNYDNYCYESFWDSDFSDCDYADF

Q9S9V9 Putative F-box/LRR-repeat protein 231.3e-2152.38Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSHSHGEDYPLTFYDSDDDYD
        D+ A AIAE+MP L HLQ+  N LTN+GL AILDGCP LE LDLR CFN+NLVG L  +C ERIK LR P+D  D    DS    ++  +T + S  +  
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSHSHGEDYPLTFYDSDDDYD

Query:  NYNNY
        +Y+ Y
Subjt:  NYNNY

Arabidopsis top hitse value%identityAlignment
AT4G03630.1 RNI-like superfamily protein8.0e-2258.02Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDS
        D +AL IA+ MP L  LQ+F N +++ GL AI DGCP LE LDLR CFN+NLVG L  +C ERIK LR P+D T D  YD+
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDS

AT4G05460.1 RNI-like superfamily protein2.1e-2246.51Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSHSHGEDYPLTFYD---SDD
        D++ALAIAE MP L HLQ+  N L++ GL AILD C +LE LDLR CFN+NLVG L  +C E +K +R P+D   DI   S    + Y  +  D    DD
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSHSHGEDYPLTFYD---SDD

Query:  DYDNYNNYDNYCYESFWDSDFSDCDYADF
        D++ Y       Y+    SDFSD D  DF
Subjt:  DYDNYNNYDNYCYESFWDSDFSDCDYADF

AT4G05470.1 RNI-like superfamily protein5.6e-2361.25Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYD
        D++ALAIAE+MP LHHLQ+  N LTN GL AILDGCP LE LD+R CF ++LVG L  +C E IK LR P D T D  Y+
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYD

AT4G05475.1 RNI-like superfamily protein1.1e-2363.75Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLES-LDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY
        D++ALAIAE+MP L HLQ+  N LTN GL AILDGCP LE  LD+R CFN+NLVG L  +C +RIK LR PHD T D  Y
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLES-LDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY

AT4G05490.1 RNI-like superfamily protein3.6e-2252.73Show/hide
Query:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY----DSHS----HGEDYPLTF
        D +ALAIA+ MP L HLQ+  N LTN GL AILDGCP LE LDLR CFN+NL G L  +C ERIK  R P+D  DD  Y    D+ S     GE+     
Subjt:  DEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRY----DSHS----HGEDYPLTF

Query:  YDSDDDYDNY
        Y SDD    Y
Subjt:  YDSDDDYDNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGTGATGAGGAAGCCCTTGCTATTGCTGAAAATATGCCTAATTTGCATCACCTCCAGATATTTGACAACAGCCTAACTAACAGGGGCTTGCAGGCCATT
CTTGATGGTTGTCCTGATCTGGAATCTCTTGATTTACGTCACTGTTTCAACTTGAATTTGGTGGGACCATTGGGAACTAAATGTGCTGAAAGGATCAAAAGTTTG
CGCCTGCCTCATGATCCCACTGATGATATTCGTTATGATTCTCATTCTCATGGTGAAGATTACCCTTTAACTTTCTACGACTCCGATGATGACTACGATAACTAC
AACAACTACGACAACTACTGCTATGAATCCTTTTGGGACTCTGATTTCTCTGACTGTGACTATGCAGATTTCTTCTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGTGATGAGGAAGCCCTTGCTATTGCTGAAAATATGCCTAATTTGCATCACCTCCAGATATTTGACAACAGCCTAACTAACAGGGGCTTGCAGGCCATT
CTTGATGGTTGTCCTGATCTGGAATCTCTTGATTTACGTCACTGTTTCAACTTGAATTTGGTGGGACCATTGGGAACTAAATGTGCTGAAAGGATCAAAAGTTTG
CGCCTGCCTCATGATCCCACTGATGATATTCGTTATGATTCTCATTCTCATGGTGAAGATTACCCTTTAACTTTCTACGACTCCGATGATGACTACGATAACTAC
AACAACTACGACAACTACTGCTATGAATCCTTTTGGGACTCTGATTTCTCTGACTGTGACTATGCAGATTTCTTCTATCCTTGA
Protein sequenceShow/hide protein sequence
MPGDEEALAIAENMPNLHHLQIFDNSLTNRGLQAILDGCPDLESLDLRHCFNLNLVGPLGTKCAERIKSLRLPHDPTDDIRYDSHSHGEDYPLTFYDSDDDYDNY
NNYDNYCYESFWDSDFSDCDYADFFYP