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Moc01g33600 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g33600
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionF-box protein SKIP19-like
Genome locationchr1:23674245..23675085
RNA-Seq ExpressionMoc01g33600
SyntenyMoc01g33600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581459.1 F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1141.88Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+TSMI++K                                          YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGTD+LL YI+Q    L
Subjt:  FGTDELLHYISQRIKSL

XP_022146724.1 putative F-box/LRR-repeat protein 23 [Momordica charantia]1.4e-1447.37Show/hide
Query:  MASKSNPKCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGT
        M S SNP  EE ARNWLELP D TSMI+MK                                           D EK+CMQAVDRS GQLVDINIE FGT
Subjt:  MASKSNPKCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGT

Query:  DELLHYISQRIKSL
        DELLHYI+Q    L
Subjt:  DELLHYISQRIKSL

XP_022978592.1 F-box protein SKIP19-like [Cucurbita maxima]1.1e-1141.88Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+TSMI++K                                          YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGTD+LL YI+Q    L
Subjt:  FGTDELLHYISQRIKSL

XP_023543623.1 F-box protein SKIP19-like [Cucurbita pepo subsp. pepo]1.3e-1242.74Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+TSMI++K                                          YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGTD+LLHYI+Q    L
Subjt:  FGTDELLHYISQRIKSL

XP_038883784.1 F-box protein SKIP19-like [Benincasa hispida]6.5e-1242.61Show/hide
Query:  MASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFG
        M S SNP   EE++RNWLELP D+ SMI+ K                                          YD E++C QAV RS GQLVDINIEHFG
Subjt:  MASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFG

Query:  TDELLHYISQRIKSL
        TD+LLHYI+Q    L
Subjt:  TDELLHYISQRIKSL

TrEMBL top hitse value%identityAlignment
A0A6J1CXS5 F-box protein SKIP19-like2.7e-1140Show/hide
Query:  KSNPKCEEQARNWLELPEDITSMIMMK----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELL
        +SNP   ++ARNWLELP DITSMI++K                                         YD E++C+QAVDRS G+L+DINI++FGT+ELL
Subjt:  KSNPKCEEQARNWLELPEDITSMIMMK----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELL

Query:  HYISQRIKSL
         YI+Q    L
Subjt:  HYISQRIKSL

A0A6J1CYW9 putative F-box/LRR-repeat protein 236.8e-1547.37Show/hide
Query:  MASKSNPKCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGT
        M S SNP  EE ARNWLELP D TSMI+MK                                           D EK+CMQAVDRS GQLVDINIE FGT
Subjt:  MASKSNPKCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGT

Query:  DELLHYISQRIKSL
        DELLHYI+Q    L
Subjt:  DELLHYISQRIKSL

A0A6J1ECV6 F-box protein SKIP19-like isoform X12.7e-1141.03Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+TSMI++K                                          YD E++C QAVDRS GQL+ I IEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGTD+LL YI+Q    L
Subjt:  FGTDELLHYISQRIKSL

A0A6J1EGI8 F-box protein SKIP19-like isoform X22.7e-1141.03Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+TSMI++K                                          YD E++C QAVDRS GQL+ I IEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGTD+LL YI+Q    L
Subjt:  FGTDELLHYISQRIKSL

A0A6J1ILH5 F-box protein SKIP19-like5.4e-1241.88Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+TSMI++K                                          YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGTD+LL YI+Q    L
Subjt:  FGTDELLHYISQRIKSL

SwissProt top hitse value%identityAlignment
Q9M0U7 Putative F-box protein At4g054752.8e-0529.09Show/hide
Query:  KCEEQARNWLELPEDITSMIMMK--------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR
        K +E+  NW++LP ++T+ I+++                                       +D E +C   VD S+G L++INIEHF +D LL YI  R
Subjt:  KCEEQARNWLELPEDITSMIMMK--------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR

Query:  ---IKSLCLS
           +KSL +S
Subjt:  ---IKSLCLS

Q9M0U9 F-box protein SKIP191.2e-0530.77Show/hide
Query:  MASKSNPKCE---EQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAS S+P       ++ NW ELP ++TS I+ +                                          Y+ E +C  AVDRS+G LVDI I +
Subjt:  MASKSNPKCE---EQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGT +LL+YI+ R  +L
Subjt:  FGTDELLHYISQRIKSL

Q9S9V9 Putative F-box/LRR-repeat protein 231.6e-0527.62Show/hide
Query:  EEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQ
        +++ RNW ELP  +TS I+++                                          YD E +C  AVDRS G L++I I ++GT++L+ YI+ 
Subjt:  EEQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQ

Query:  RIKSL
        R  +L
Subjt:  RIKSL

Arabidopsis top hitse value%identityAlignment
AT4G03630.1 RNI-like superfamily protein2.4e-0452.63Show/hide
Query:  KICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSL
        ++   AV  S+G  V+INIEHFGTD LL YI+ R  +L
Subjt:  KICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSL

AT4G05460.1 RNI-like superfamily protein8.8e-0730.77Show/hide
Query:  MASKSNPKCE---EQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH
        MAS S+P       ++ NW ELP ++TS I+ +                                          Y+ E +C  AVDRS+G LVDI I +
Subjt:  MASKSNPKCE---EQARNWLELPEDITSMIMMK-----------------------------------------GYDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSL
        FGT +LL+YI+ R  +L
Subjt:  FGTDELLHYISQRIKSL

AT4G05475.1 RNI-like superfamily protein2.0e-0629.09Show/hide
Query:  KCEEQARNWLELPEDITSMIMMK--------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR
        K +E+  NW++LP ++T+ I+++                                       +D E +C   VD S+G L++INIEHF +D LL YI  R
Subjt:  KCEEQARNWLELPEDITSMIMMK--------------------------------------GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR

Query:  ---IKSLCLS
           +KSL +S
Subjt:  ---IKSLCLS

AT5G52480.1 RNI-like superfamily protein9.7e-0648.15Show/hide
Query:  EKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLCLSHDPVDDYDF
        E IC  AVDRS G L++INI  FG+D LL YI++R   ++SL L    + D  F
Subjt:  EKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLCLSHDPVDDYDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGGCGTCGAAATCGAACCCTAAATGTGAAGAGCAAGCGAGGAACTGGCTTGAACTGCCTGAAGACATCACGTCTATGATTATGATGAAGGGCTACGATTCGGA
GAAGATATGTATGCAGGCTGTTGATCGTAGTCGTGGCCAACTGGTTGACATCAATATCGAGCATTTTGGCACCGATGAGTTGCTCCACTATATCTCTCAGAGGATTAAAA
GTTTGTGCCTGTCTCATGATCCCGTTGATGACTATGATTTCTCTGTCGATCCCTATATTGATAGCGACTACGAGGAATCATTTTCGAATCCTAGTAATCTGAAACGAAAC
GGTACGGGCAGTAACTGGGAGCCAAACCCTAGTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGGCGTCGAAATCGAACCCTAAATGTGAAGAGCAAGCGAGGAACTGGCTTGAACTGCCTGAAGACATCACGTCTATGATTATGATGAAGGGCTACGATTCGGA
GAAGATATGTATGCAGGCTGTTGATCGTAGTCGTGGCCAACTGGTTGACATCAATATCGAGCATTTTGGCACCGATGAGTTGCTCCACTATATCTCTCAGAGGATTAAAA
GTTTGTGCCTGTCTCATGATCCCGTTGATGACTATGATTTCTCTGTCGATCCCTATATTGATAGCGACTACGAGGAATCATTTTCGAATCCTAGTAATCTGAAACGAAAC
GGTACGGGCAGTAACTGGGAGCCAAACCCTAGTTCATGA
Protein sequenceShow/hide protein sequence
MAMASKSNPKCEEQARNWLELPEDITSMIMMKGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLCLSHDPVDDYDFSVDPYIDSDYEESFSNPSNLKRN
GTGSNWEPNPSS