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Moc01g34660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g34660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr1:24526370..24526819
RNA-Seq ExpressionMoc01g34660
SyntenyMoc01g34660
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.8e-0929.58Show/hide
Query:  QQAKKFISEFNNSQF----ATSTDNTSSKTHMYRRNSKEN-----SKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKM
        QQ  + I  F NS        S    S +   Y    +EN      +W  PP + W LNTDASWS   ++GG+GW++    GE++ AGN  +     +  
Subjt:  QQAKKFISEFNNSQF----ATSTDNTSSKTHMYRRNSKEN-----SKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKM

Query:  LEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS
        LE+  ++ GL++  +++R   +   DS+EV +++ ++  D +
Subjt:  LEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.6e-1235.48Show/hide
Query:  NTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDS
        +T+   H+ RR      ++W PP  ++W LNT+A+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP      DS
Subjt:  NTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDS

Query:  IEVAQILNEQVDDFSEIQWLVDEI
        +E   +L+ Q  D +EI WL++EI
Subjt:  IEVAQILNEQVDDFSEIQWLVDEI
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.6e-0732.23Show/hide
Query:  NNSQFATSTDNTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---
        N++   T+    S   H  RR      ++W PP  ++W LNTDA+W +     G+GW++R   GEVI  G +++    ++  LE+ A+ EGLR +     
Subjt:  NNSQFATSTDNTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---

Query:  RPTPFPICDSIEVAQILNEQV
        RP      DS+E   +L+  V
Subjt:  RPTPFPICDSIEVAQILNEQV
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]9.7e-2642Show/hide
Query:  MIQQAKKFISEFNNSQFATSTDNTSSKTHMYRRNSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVL
        MIQQ  KF++E        S+  + +   M  +      KW PPP+H WTLN DASWS S   GG+GW++RSW G+++ AGN+ V+ C +VK+LE  A+L
Subjt:  MIQQAKKFISEFNNSQFATSTDNTSSKTHMYRRNSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVL

Query:  EGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQWLVDEIKRLKE
        EGLR L N     P+    DS EV  +LN + +D ++  W+V+EI  L++
Subjt:  EGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQWLVDEIKRLKE
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.2e-1335.38Show/hide
Query:  HMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------D
        H+ RR      ++W PP  ++W LNTDA+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP     C       D
Subjt:  HMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------D

Query:  SIEVAQILNEQVDDFSEIQWLVDEIKRLKE
        S+E   +L+ Q  D +EI WL++EI ++ E
Subjt:  SIEVAQILNEQVDDFSEIQWLVDEIKRLKE
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.8e-1335.48Show/hide
Query:  NTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDS
        +T+   H+ RR      ++W PP  ++W LNT+A+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP      DS
Subjt:  NTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDS

Query:  IEVAQILNEQVDDFSEIQWLVDEI
        +E   +L+ Q  D +EI WL++EI
Subjt:  IEVAQILNEQVDDFSEIQWLVDEI
A0A6J1CQG0 uncharacterized protein LOC1110132161.4e-0929.58Show/hide
Query:  QQAKKFISEFNNSQF----ATSTDNTSSKTHMYRRNSKEN-----SKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKM
        QQ  + I  F NS        S    S +   Y    +EN      +W  PP + W LNTDASWS   ++GG+GW++    GE++ AGN  +     +  
Subjt:  QQAKKFISEFNNSQF----ATSTDNTSSKTHMYRRNSKEN-----SKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKM

Query:  LEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS
        LE+  ++ GL++  +++R   +   DS+EV +++ ++  D +
Subjt:  LEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X17.5e-0832.23Show/hide
Query:  NNSQFATSTDNTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---
        N++   T+    S   H  RR      ++W PP  ++W LNTDA+W +     G+GW++R   GEVI  G +++    ++  LE+ A+ EGLR +     
Subjt:  NNSQFATSTDNTSSKTHMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---

Query:  RPTPFPICDSIEVAQILNEQV
        RP      DS+E   +L+  V
Subjt:  RPTPFPICDSIEVAQILNEQV
A0A6J1DNV9 uncharacterized protein LOC1110224034.7e-2642Show/hide
Query:  MIQQAKKFISEFNNSQFATSTDNTSSKTHMYRRNSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVL
        MIQQ  KF++E        S+  + +   M  +      KW PPP+H WTLN DASWS S   GG+GW++RSW G+++ AGN+ V+ C +VK+LE  A+L
Subjt:  MIQQAKKFISEFNNSQFATSTDNTSSKTHMYRRNSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVL

Query:  EGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQWLVDEIKRLKE
        EGLR L N     P+    DS EV  +LN + +D ++  W+V+EI  L++
Subjt:  EGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQWLVDEIKRLKE
A0A6J1DSV1 uncharacterized protein LOC1110236082.0e-1335.38Show/hide
Query:  HMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------D
        H+ RR      ++W PP  ++W LNTDA+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP     C       D
Subjt:  HMYRR-NSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------D

Query:  SIEVAQILNEQVDDFSEIQWLVDEIKRLKE
        S+E   +L+ Q  D +EI WL++EI ++ E
Subjt:  SIEVAQILNEQVDDFSEIQWLVDEIKRLKE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0634.85Show/hide
Query:  KWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW
        +W  PP      NTDA+W   +   G+GW++R+ +G V++ G + +    +V    +EA LE LRW
Subjt:  KWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW
AT4G29090.1 Ribonuclease H-like superfamily protein2.6e-0839.73Show/hide
Query:  NSKENSKWVPPPLHTWT-LNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW
        N     +W PPP H W   NTDA+W+  ++  G+GWV+R+  GEV + G + +    SV    +EA LE +RW
Subjt:  NSKENSKWVPPPLHTWT-LNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCAACAGGCCAAAAAATTCATCTCAGAATTCAATAATAGTCAATTTGCAACTTCAACAGACAACACAAGCAGCAAGACTCATATGTACAGAAGGAATTCTAAGGA
AAATTCAAAATGGGTACCACCCCCATTACATACCTGGACTCTAAATACCGACGCCTCTTGGTCTTCTTCTCACCAATTGGGCGGGTTAGGATGGGTGGTGCGAAGCTGGA
CGGGAGAGGTCATCTACGCCGGAAATAAGGTGGTCGATAACTGCTGGAGCGTGAAAATGCTAGAGATGGAAGCAGTGCTGGAGGGGCTTCGTTGGCTGGAAAATCGACCG
ACGCCGTTCCCGATCTGTGATTCAATTGAGGTGGCCCAGATTTTGAATGAGCAAGTCGACGATTTTTCCGAAATCCAATGGTTGGTTGACGAAATCAAGAGATTGAAGGA
GTTAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCAACAGGCCAAAAAATTCATCTCAGAATTCAATAATAGTCAATTTGCAACTTCAACAGACAACACAAGCAGCAAGACTCATATGTACAGAAGGAATTCTAAGGA
AAATTCAAAATGGGTACCACCCCCATTACATACCTGGACTCTAAATACCGACGCCTCTTGGTCTTCTTCTCACCAATTGGGCGGGTTAGGATGGGTGGTGCGAAGCTGGA
CGGGAGAGGTCATCTACGCCGGAAATAAGGTGGTCGATAACTGCTGGAGCGTGAAAATGCTAGAGATGGAAGCAGTGCTGGAGGGGCTTCGTTGGCTGGAAAATCGACCG
ACGCCGTTCCCGATCTGTGATTCAATTGAGGTGGCCCAGATTTTGAATGAGCAAGTCGACGATTTTTCCGAAATCCAATGGTTGGTTGACGAAATCAAGAGATTGAAGGA
GTTAAAGTGA
Protein sequenceShow/hide protein sequence
MIQQAKKFISEFNNSQFATSTDNTSSKTHMYRRNSKENSKWVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLENRP
TPFPICDSIEVAQILNEQVDDFSEIQWLVDEIKRLKELK