CuGenDBv2

Gene ID	Moc02g01280
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Genome location	chr2:976129..976569
RNA-Seq Expression	Moc02g01280
Synteny	Moc02g01280
Gene Ontology terms	GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

1.9e-21

42.96

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKN
        N WKLNT+AAW A+   GG+GWI+R+EK E+ KA  + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+    Q+ TEI+WL+++I  
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKN

Query:  FGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE
          +   +   +H+ R+ N VA  +A RA +  + E
Subjt:  FGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]

2.5e-74

100

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Query:  MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE
        MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE
Subjt:  MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE

Query:  ILWLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEEN
        ILWLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEEN
Subjt:  ILWLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEEN

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]

4.1e-13

51.85

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        N WKLNTDAAW A+    G+GWI+R+EK E+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]

4.1e-13

51.85

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        N WKLNTDAAW A+    G+GWI+R+EK E+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

4.1e-21

41.96

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEIL
        N WKLNTDAAW A+   GG+GWI+R+EK E+ KA  + I   R+ITYLE+MAI  G+ A        +       + +ES+SLEAIHL+    Q+ TEI+
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEIL

Query:  WLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE
        WL+++I    E  ++   +H+ R+ N VA ++A RA +  + E
Subjt:  WLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

9.0e-22

42.96

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKN
        N WKLNT+AAW A+   GG+GWI+R+EK E+ KA  + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+    Q+ TEI+WL+++I  
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKN

Query:  FGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE
          +   +   +H+ R+ N VA  +A RA +  + E
Subjt:  FGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE

A0A6J1D5W1 uncharacterized protein LOC111017329

1.2e-74

100

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Query:  MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE
        MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE
Subjt:  MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE

Query:  ILWLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEEN
        ILWLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEEN
Subjt:  ILWLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEEN

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X1

2.0e-13

51.85

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        N WKLNTDAAW A+    G+GWI+R+EK E+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X2

2.0e-13

51.85

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        N WKLNTDAAW A+    G+GWI+R+EK E+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI

A0A6J1DSV1 uncharacterized protein LOC111023608

2.0e-21

41.96

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Query:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEIL
        N WKLNTDAAW A+   GG+GWI+R+EK E+ KA  + I   R+ITYLE+MAI  G+ A        +       + +ES+SLEAIHL+    Q+ TEI+
Subjt:  NFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEIL

Query:  WLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE
        WL+++I    E  ++   +H+ R+ N VA ++A RA +  + E
Subjt:  WLVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRAADGLVEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

2.3e-06

23.78

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Query:  MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE
        +S+     P  + K NTDA W       G+GWI+RNE   +   G + +   +++   EL A+   +  +   +   +I ES++   ++L+       ++
Subjt:  MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTE

Query:  ILW-----LVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRA
          W      ++DI+         +F+   R GN VA  IA  +
Subjt:  ILW-----LVQDIKNFGERARLKRFQHVQRDGNSVAQEIANRA

AT4G29090.1 Ribonuclease H-like superfamily protein

8.6e-09

25.38

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Query:  PDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDI
        P  + K NTDA W+ +    G+GW++RNEK E+K  G + +   + +   EL A+   + ++       +I ES+S   I ++    +    +   +QD+
Subjt:  PDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDI

Query:  KNFGERARLKRFQHVQRDGNSVAQEIANRA
        +    +    +F  + R+GN++A+ +A  +
Subjt:  KNFGERARLKRFQHVQRDGNSVAQEIANRA

Sequences

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CDS sequence

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ATGAGTTTAACTCAACACTTGTCTCCAGATAATTTTTGGAAACTAAACACTGATGCGGCTTGGCATGCGAACCAAGGGGTGGGAGGTCTCGGATGGATAATCAGGAACGA
GAAGAGAGAAATTAAGAAAGCAGGAGGACAAACTATCACTGATGCGCGAGACATTACTTACTTGGAGTTAATGGCGATTTGGCTAGGGATTGAAGCGGTTGTGTCTTCTT
CTTCGGTTTCGCTAATAATTGAATCGGAGTCATTGGAAGCGATCCATCTTATTCAAGGAATCCAACAGAATGTGACTGAGATCTTATGGCTGGTGCAGGATATCAAGAAT
TTTGGTGAGAGAGCACGATTGAAGAGATTCCAGCACGTCCAAAGGGACGGAAATTCTGTTGCCCAAGAAATTGCAAATCGAGCGGCTGATGGTTTGGTGGAGGAAAATTG
A

mRNA sequence

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Protein sequence

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MSLTQHLSPDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKN
FGERARLKRFQHVQRDGNSVAQEIANRAADGLVEEN

Moc02g01280 (gene) of Bitter gourd (OHB3-1) v2 genome