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Moc02g01500 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g01500
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationchr2:1119573..1119896
RNA-Seq ExpressionMoc02g01500
SyntenyMoc02g01500
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]1.1e-2675.7Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PS+  RR LIVAKAS  +N AS  N+E+ ++V+VES QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]1.7e-2777.57Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+ ++V+VES QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

XP_022148791.1 photosystem II 5 kDa protein, chloroplastic [Momordica charantia]1.0e-45100Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
        MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP

Query:  TARICRN
        TARICRN
Subjt:  TARICRN

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]2.4e-2676.36Show/hide
Query:  MASTAIAASFLPLTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC
        MAS +I ASFLP TA  PS AA RRAL V KA  SAAA D+ S  NLE+ ++V+VES QGRRELVAAAVTVAAAT AKAAMADEP RGSAEAKQKYAP+C
Subjt:  MASTAIAASFLPLTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]1.7e-2776.64Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PS A RRAL+VAKAS  ++DAS  NLE+ ++V+VE+ QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein5.2e-2775.7Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PS+  RR LIVAKAS  +N AS  N+E+ ++V+VES QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic8.0e-2877.57Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+ ++V+VES QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A5A7TID9 Photosystem II 5 kDa protein8.0e-2877.57Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+ ++V+VES QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A6J1D6G0 photosystem II 5 kDa protein, chloroplastic5.0e-46100Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
        MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP

Query:  TARICRN
        TARICRN
Subjt:  TARICRN

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic1.2e-2676.36Show/hide
Query:  MASTAIAASFLPLTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC
        MAS +I ASFLP TA  PS AA RRAL V KA  SAAA D+ S  NLE+ ++V+VES QGRRELVAAAVTVAAAT AKAAMADEP RGSAEAKQKYAP+C
Subjt:  MASTAIAASFLPLTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.2e-0943.64Show/hide
Query:  MASTAIAASFLPLTAKHPS---AATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMAD-EPKRGSAEAKQKYAPVC
        MAS  + +SFL  +   P+   +A RR +++ KA     +    N+ ++++ + ++  GRREL  A    AA ++AK AMAD EPKRG+ EAK+KY+ VC
Subjt:  MASTAIAASFLPLTAKHPS---AATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMAD-EPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VT PTARICR
Subjt:  VTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic5.4e-1349.54Show/hide
Query:  MASTAIAASFLPLT--AKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVT
        MAS  +  SFL  T   K     T+R L+VA    AA  A   +++M+   + E   GRRE++ AA   A  ++A  A A EPKRGSAEAK+ YAPVCVT
Subjt:  MASTAIAASFLPLT--AKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVT

Query:  MPTARICRN
        MPTARICRN
Subjt:  MPTARICRN

Q39195 Photosystem II 5 kDa protein, chloroplastic9.2e-1349.07Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT
        MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+    +  S   RR+L+  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVT
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein6.3e-1750.45Show/hide
Query:  MASTAIAASFLPLTAKHP---SAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA-DEPKRGSAEAKQKYAPVC
        MAS  + +SFLP  +  P   S+ +RR+L V KAS + N  S  N +  +S+++     RR+LV  A   A  +LAK AMA DEPKRG+  AK+KYAPVC
Subjt:  MASTAIAASFLPLTAKHP---SAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA-DEPKRGSAEAKQKYAPVC

Query:  VTMPTARICRN
        VTMPTA+ICRN
Subjt:  VTMPTARICRN

AT3G21055.1 photosystem II subunit T6.5e-1449.07Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT
        MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+    +  S   RR+L+  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVT
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCACCGCAATCGCAGCCTCCTTCCTCCCCCTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGA
CGCGTCCAAGCCCAACTTGGAGATGAATAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGCCGCCGTGACGGTGGCTGCGGCCACCTTGGCCA
AGGCAGCGATGGCGGACGAGCCGAAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCACCGCAATCGCAGCCTCCTTCCTCCCCCTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGA
CGCGTCCAAGCCCAACTTGGAGATGAATAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGCCGCCGTGACGGTGGCTGCGGCCACCTTGGCCA
AGGCAGCGATGGCGGACGAGCCGAAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGCAACTGA
Protein sequenceShow/hide protein sequence
MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN