; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc02g03090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g03090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPhotosystem II protein D1
Genome locationchr2:2356923..2357660
RNA-Seq ExpressionMoc02g03090
SyntenyMoc02g03090
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR022546 - Uncharacterised protein family Ycf68


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5511298.1 hypothetical protein DKX38_030093 [Salix brachista]3.0e-4061.41Show/hide
Query:  SLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYAS-PSSGGFL-------LCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGN
        SLLLLREKK TTR   TSTRHCSV+LSPIAENSPLLPPVGVWAVSQ  +   P++   L       L +       A SS CS   G  L          
Subjt:  SLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYAS-PSSGGFL-------LCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGN

Query:  TTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHP--LTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFRHVK
               + LSF     LYPCASYSL VRS+KYSHP+P  LTSIPRASYPFSFDH GGGAS+NRKTHIGFRDNQARTDDF HVK
Subjt:  TTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHP--LTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFRHVK

KAF1876762.1 hypothetical protein Lal_00044213 [Lupinus albus]4.7e-4665.92Show/hide
Query:  TRRPSTSTRHCSVR---LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS-----HK
        TRRPSTSTRHCS     LSP   + PL P     +G     Q  +Q  +P       CSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS     +K
Subjt:  TRRPSTSTRHCSVR---LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS-----HK

Query:  ANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASY--PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKT
        A+SE SFIPR NLYPCASYS GVRSQKYS P PL SIP ASY  PFSFDH  G  +NRKTHIGFR NQARTDD   VK+
Subjt:  ANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASY--PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKT

MBA0642196.1 hypothetical protein [Gossypium klotzschianum]2.0e-4158.43Show/hide
Query:  TRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLY
        TR PSTSTRHCS+RLSPI ENSPL PP+ VW       A    G       AYGVLA +SSCCSPPKGRFLR+T+PSATGNTTS K  S+LSF+PRHNLY
Subjt:  TRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLY

Query:  PCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLY
        PCASY                      +P      G A KNRKTHIGFRDNQAR DDF HVK  +Y
Subjt:  PCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLY

PHU30032.1 Photosystem II protein D1 [Capsicum chinense]8.1e-3858.96Show/hide
Query:  STTRRPSTSTRHCSVRLSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRF---LRVTHPSATGNTTSHKANS
        ST   PS  +  C   LSP   + PL P     +G     Q  +Q  +P       CSSAYGVLAAVSSCCSPPKGR    +R        +    KANS
Subjt:  STTRRPSTSTRHCSVRLSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRF---LRVTHPSATGNTTSHKANS

Query:  ELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK
        ELSFIPRHNLYPCASYS GV SQKYSHP PLTSIPRASYPFS + GGGA+  RKT IG RDNQARTDDF HVK
Subjt:  ELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK

VVA28225.1 PREDICTED: conserved [Prunus dulcis]8.0e-5473.58Show/hide
Query:  LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLG
        LSP   + PL P     +G     Q  +Q  +P       CSSAYG LAAVSSCCSPPKGRFLRVTHPSATG TTSHKA+SELSFIPRHNL PC+SYS G
Subjt:  LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLG

Query:  VRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR
        VRSQKYSHP+PLTSIPRASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Subjt:  VRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR

TrEMBL top hitse value%identityAlignment
A0A5E4FJV7 PREDICTED: conserved3.9e-5473.58Show/hide
Query:  LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLG
        LSP   + PL P     +G     Q  +Q  +P       CSSAYG LAAVSSCCSPPKGRFLRVTHPSATG TTSHKA+SELSFIPRHNL PC+SYS G
Subjt:  LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLG

Query:  VRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR
        VRSQKYSHP+PLTSIPRASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Subjt:  VRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR

A0A5N5IVD9 Uncharacterized protein1.4e-4061.41Show/hide
Query:  SLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYAS-PSSGGFL-------LCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGN
        SLLLLREKK TTR   TSTRHCSV+LSPIAENSPLLPPVGVWAVSQ  +   P++   L       L +       A SS CS   G  L          
Subjt:  SLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYAS-PSSGGFL-------LCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGN

Query:  TTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHP--LTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFRHVK
               + LSF     LYPCASYSL VRS+KYSHP+P  LTSIPRASYPFSFDH GGGAS+NRKTHIGFRDNQARTDDF HVK
Subjt:  TTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHP--LTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFRHVK

A0A6A5N1F4 Uncharacterized protein2.3e-4665.92Show/hide
Query:  TRRPSTSTRHCSVR---LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS-----HK
        TRRPSTSTRHCS     LSP   + PL P     +G     Q  +Q  +P       CSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS     +K
Subjt:  TRRPSTSTRHCSVR---LSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTS-----HK

Query:  ANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASY--PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKT
        A+SE SFIPR NLYPCASYS GVRSQKYS P PL SIP ASY  PFSFDH  G  +NRKTHIGFR NQARTDD   VK+
Subjt:  ANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASY--PFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKT

A0A6N2K292 Uncharacterized protein4.2e-4861Show/hide
Query:  MLIPQIPSLLLLREKKS-------------TTRRPSTSTRHCSVRLSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCC
        MLIPQIPSLLLL E+ S             ++ RP     HC   L P   + PL P     +G     Q  +Q  +P       CSSAYGVLAAVSSCC
Subjt:  MLIPQIPSLLLLREKKS-------------TTRRPSTSTRHCSVRLSPIAENSPLLPP----VGVWAVSQ--SQYASPSSGGFLLCSSAYGVLAAVSSCC

Query:  SPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFRHVK
        SPPKGRFLRVTHPSATGNTTS              LYPCASYSL VRS+KYSHP+PLTSIPRASYPFSFDH GGGAS+NRKTHIGFRDNQARTDDF HVK
Subjt:  SPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFRHVK

A0A7J8TVE3 Uncharacterized protein9.9e-4258.43Show/hide
Query:  TRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLY
        TR PSTSTRHCS+RLSPI ENSPL PP+ VW       A    G       AYGVLA +SSCCSPPKGRFLR+T+PSATGNTTS K  S+LSF+PRHNLY
Subjt:  TRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELSFIPRHNLY

Query:  PCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLY
        PCASY                      +P      G A KNRKTHIGFRDNQAR DDF HVK  +Y
Subjt:  PCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTATTCCCCAGATACCGTCATTGCTTCTTCTCCGGGAAAAGAAGTCCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGC
GGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTGCTCCTCAGCGTACGGGGTAT
TAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCACAAAGCTAATTCGGAATTGTCT
TTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCC
ATTCTCATTCGATCACGGCGGGGGGGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACAGATGACTTCCGCCACGTCAAGACGACACTCT
ACCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTATTCCCCAGATACCGTCATTGCTTCTTCTCCGGGAAAAGAAGTCCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGC
GGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTGCTCCTCAGCGTACGGGGTAT
TAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCACAAAGCTAATTCGGAATTGTCT
TTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCC
ATTCTCATTCGATCACGGCGGGGGGGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACAGATGACTTCCGCCACGTCAAGACGACACTCT
ACCGCTGA
Protein sequenceShow/hide protein sequence
MLIPQIPSLLLLREKKSTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQYASPSSGGFLLCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSHKANSELS
FIPRHNLYPCASYSLGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKTTLYR