CuGenDBv2

Gene ID	Moc02g04610
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	F-box protein SNE-like
Genome location	chr2:3409308..3409763
RNA-Seq Expression	Moc02g04610
Synteny	Moc02g04610
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

2.2e-73

91.95

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND+LDILIEILKRLDGPS+GVA CVC LWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

6.3e-73

91.95

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVA CVC LWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

3.7e-73

91.95

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND LDILIEILKRLDGPS+GVA CVC LWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_022140541.1 F-box protein SNE-like [Momordica charantia]

4.8e-81

100

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Query:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
        MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
Subjt:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS

Query:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

2.2e-73

93.29

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVA CVC LWCTIARSES+WE +CFRHV SPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

3.0e-73

91.95

Show/hide

Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVA CVC LWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

1.8e-73

91.95

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND LDILIEILKRLDGPS+GVA CVC LWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

1.0e-73

91.95

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND+LDILIEILKRLDGPS+GVA CVC LWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A6J1CGD7 F-box protein SNE-like

2.3e-81

100

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Query:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
        MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
Subjt:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS

Query:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

4.0e-73

91.28

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVAACVC LWCTIAR+ES+WEH+CFRHV SPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS++
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

3.5e-10

33.91

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Query:  DILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV
        D++ E+L+R +  ++  AACV   W  +A  E LWE  C R   +       +++VV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

6.4e-36

54.55

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Query:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F INDH D+L+EIL+RLDG S+  AACVC LW  +AR++S+WE LCFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

1.9e-11

33.63

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Query:  DILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
        +++ E+LK +D  ++ +++CV  +W   A+ E LWE +C RH  +     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+LSL 
Subjt:  DILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF

Query:  CVDYYERLTGSGR
         + YYE+++ + R
Subjt:  CVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.3e-12

33.63

Show/hide

Query:  DILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
        +++ E+LK +D  ++ +++CV  +W   A+ E LWE +C RH  +     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+LSL 
Subjt:  DILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF

Query:  CVDYYERLTGSGR
         + YYE+++ + R
Subjt:  CVDYYERLTGSGR

AT5G48170.1 F-box family protein

4.5e-37

54.55

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Query:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F INDH D+L+EIL+RLDG S+  AACVC LW  +AR++S+WE LCFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Sequences

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CDS sequence

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ATGCATAATCGCATACCTGAGCGGAATGAGAAGAGGCGGAAGTTCTTAATCAATGACCATCTCGACATTCTGATAGAAATCCTGAAGCGGCTGGATGGACCGTCGATTGG
CGTGGCGGCGTGCGTCTGCCACCTCTGGTGCACCATCGCTCGAAGCGAATCGCTGTGGGAACACCTCTGCTTCCGGCACGTGAGATCGCCGCTTCCTTCGTCGGTGAAGT
CCGTGGTCGCCGCCCTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGAC
GAGGTCCAACTTTCGCTGTCTCTGTTCTGCGTGGATTACTACGAGCGCCTCACAGGGAGCGGCAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTGCAA
CACCGTCAACGTCTGA

mRNA sequence

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Protein sequence

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MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCHLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQD
EVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Moc02g04610 (gene) of Bitter gourd (OHB3-1) v2 genome