; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc02g05290 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g05290
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionhigh mobility group B protein 3-like
Genome locationchr2:3894148..3895176
RNA-Seq ExpressionMoc02g05290
SyntenyMoc02g05290
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140698.1 high mobility group B protein 3-like [Momordica charantia]4.0e-5893.48Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIF+        EEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
        YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
Subjt:  YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_022947100.1 high mobility group B protein 3-like [Cucurbita moschata]2.7e-4679.29Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIF+        EEFRKTFKEKFPDAKAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RK EY IALE 
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        YKK LNC   A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_022971125.1 high mobility group B protein 3-like [Cucurbita maxima]2.7e-4678.57Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIF+        EEFRKTFKEKFPDAKAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RK EY IALE 
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        YKK LNC   A+AE  + TESQKSTS+V DD +QEASSSS
Subjt:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_023533147.1 high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]1.2e-4679.29Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIF+        EEFRKTFKEKFPDAKAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RK EY IALE 
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        YKK LNC   A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_038902242.1 high mobility group B protein 1-like [Benincasa hispida]9.9e-4980.71Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLKQRK EMKSTKS K+ KKDQNAPKRPATAFF+F+        EEFRKTFKE+FPDAKAGP VGKAGGEKWKS+SD EKAPYAEKAL RK EY IALEA
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNCCADAEA--AMPTESQKSTSEVHDDVDQEASSSS
        YKK LNCCADAEA   MPTESQKSTSEVHDD +QEASSSS
Subjt:  YKKTLNCCADAEA--AMPTESQKSTSEVHDDVDQEASSSS

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X12.6e-3970.75Show/hide
Query:  LKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDA--------EKAPYAEKALSRKTE
        LKQRKAEMKSTKS    KKDQNAPKRPATAFF+F+        EEFR  FKE+FPDAKAGP VGKAGGEKWKS+SDA        EKAPYAEKAL RK E
Subjt:  LKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDA--------EKAPYAEKALSRKTE

Query:  YVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        Y IALEAYK   NC   A+ E  MPTESQKSTSEV+DD +QEASSSS
Subjt:  YVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A1S3C2L9 high mobility group B protein 1-like isoform X21.6e-4174.82Show/hide
Query:  LKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAY
        LKQRKAEMKSTKS    KKDQNAPKRPATAFF+F+        EEFR  FKE+FPDAKAGP VGKAGGEKWKS+SDAEKAPYAEKAL RK EY IALEAY
Subjt:  LKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAY

Query:  KKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        K   NC   A+ E  MPTESQKSTSEV+DD +QEASSSS
Subjt:  KKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A6J1CIL2 high mobility group B protein 3-like1.9e-5893.48Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIF+        EEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
        YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
Subjt:  YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A6J1G5W3 high mobility group B protein 3-like1.3e-4679.29Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIF+        EEFRKTFKEKFPDAKAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RK EY IALE 
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        YKK LNC   A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A6J1I4V5 high mobility group B protein 3-like1.3e-4678.57Show/hide
Query:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA
        MLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIF+        EEFRKTFKEKFPDAKAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RK EY IALE 
Subjt:  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        YKK LNC   A+AE  + TESQKSTS+V DD +QEASSSS
Subjt:  YKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 12.0e-2048.39Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL
        K   + T+  K  KKD N PKR  +AFF+F+        E+FR TFK++ P+ KA  AVGKAGG+KWKS+S AEKAPY EKA  RK EY   ++AY K L
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL

Query:  NCCADAEAAMPTESQKSTSEVHDD
           +D       ES+KS SE++D+
Subjt:  NCCADAEAAMPTESQKSTSEVHDD

O49596 High mobility group B protein 27.2e-1845.93Show/hide
Query:  LKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAY
        L   K   K     K+  KD N PKRPA+AFF+F+        E+FR+TFK++ P  K+   VGKA G+KWKSLSD+EKAPY  KA  RK EY   ++AY
Subjt:  LKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAY

Query:  KKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS
         K L    +       ES KS SEV+D+ D E  S
Subjt:  KKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS

P26585 HMG1/2-like protein5.5e-1848.36Show/hide
Query:  KDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPT--
        KD N PKRP +AFF+F+        EEFRK F ++ P+ KA  AVGKA G KWK++SDAEKAPY  K+  RK EY   + AY K        +A  PT  
Subjt:  KDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPT--

Query:  ---ESQKSTSEVHDDVDQEASS
           ES+KS SEV+D+ D E  S
Subjt:  ---ESQKSTSEVHDDVDQEASS

P40619 HMG1/2-like protein1.3e-1949.62Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL
        K +   TK  K   KD N PKRP +AFF+F+        E+FRKT+KEK P+ K+   VGKAGG+KWK L+ AEKAP+  KA  RK EY   L+AY K  
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL

Query:  NCCADAEAAMPTESQKSTSEVH-DDVDQEAS
             A AA   ES KS SEV+ DD DQ+ S
Subjt:  NCCADAEAAMPTESQKSTSEVH-DDVDQEAS

P93047 High mobility group B protein 31.3e-1947.86Show/hide
Query:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVI
        KAE +STK +         K   KD N PKRP++AFF+F+        E+FR T+KE+ P  K+  AVGKAGGEKWKSLSD+EKAPY  KA  RK EY  
Subjt:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVI

Query:  ALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS
         ++AY K L    +       ES KS SEV+D+ D E  S
Subjt:  ALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B39.3e-2147.86Show/hide
Query:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVI
        KAE +STK +         K   KD N PKRP++AFF+F+        E+FR T+KE+ P  K+  AVGKAGGEKWKSLSD+EKAPY  KA  RK EY  
Subjt:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVI

Query:  ALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS
         ++AY K L    +       ES KS SEV+D+ D E  S
Subjt:  ALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS

AT3G51880.1 high mobility group B11.4e-2148.39Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL
        K   + T+  K  KKD N PKR  +AFF+F+        E+FR TFK++ P+ KA  AVGKAGG+KWKS+S AEKAPY EKA  RK EY   ++AY K L
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL

Query:  NCCADAEAAMPTESQKSTSEVHDD
           +D       ES+KS SE++D+
Subjt:  NCCADAEAAMPTESQKSTSEVHDD

AT3G51880.2 high mobility group B11.4e-2148.39Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL
        K   + T+  K  KKD N PKR  +AFF+F+        E+FR TFK++ P+ KA  AVGKAGG+KWKS+S AEKAPY EKA  RK EY   ++AY K L
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL

Query:  NCCADAEAAMPTESQKSTSEVHDD
           +D       ES+KS SE++D+
Subjt:  NCCADAEAAMPTESQKSTSEVHDD

AT3G51880.3 high mobility group B11.4e-2148.39Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL
        K   + T+  K  KKD N PKR  +AFF+F+        E+FR TFK++ P+ KA  AVGKAGG+KWKS+S AEKAPY EKA  RK EY   ++AY K L
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL

Query:  NCCADAEAAMPTESQKSTSEVHDD
           +D       ES+KS SE++D+
Subjt:  NCCADAEAAMPTESQKSTSEVHDD

AT3G51880.4 high mobility group B11.4e-2148.39Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL
        K   + T+  K  KKD N PKR  +AFF+F+        E+FR TFK++ P+ KA  AVGKAGG+KWKS+S AEKAPY EKA  RK EY   ++AY K L
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL

Query:  NCCADAEAAMPTESQKSTSEVHDD
           +D       ES+KS SE++D+
Subjt:  NCCADAEAAMPTESQKSTSEVHDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTC
ATATTTCTTGTTCTGGCAAATGATAGGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGTTGGCAAAGCCGGCGGCGAG
AAATGGAAATCATTATCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAGCTCTCGAGGCATACAAGAAAACCCTC
AATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGTAGATCAGGAAGCTAGCTCTAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTC
ATATTTCTTGTTCTGGCAAATGATAGGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGTTGGCAAAGCCGGCGGCGAG
AAATGGAAATCATTATCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAGCTCTCGAGGCATACAAGAAAACCCTC
AATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGTAGATCAGGAAGCTAGCTCTAGCTCTTAG
Protein sequenceShow/hide protein sequence
MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFIFLVLANDREEFRKTFKEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTL
NCCADAEAAMPTESQKSTSEVHDDVDQEASSSS