CuGenDBv2

Gene ID	Moc02g06030
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein STABILIZED1
Genome location	chr2:4309448..4309986
RNA-Seq Expression	Moc02g06030
Synteny	Moc02g06030
Gene Ontology terms	GO:0000244 - spliceosomal tri-snRNP complex assembly (biological process) GO:0080188 - RNA-directed DNA methylation (biological process) GO:2000630 - positive regulation of miRNA metabolic process (biological process) GO:2000636 - positive regulation of primary miRNA processing (biological process) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR000626 - Ubiquitin-like domain IPR029071 - Ubiquitin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022140441.1 protein STABILIZED1 [Momordica charantia]

9.2e-34

79.28

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVS IPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGG        +Q   I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

XP_022947634.1 protein STABILIZED1 [Cucurbita moschata]

9.9e-28

68.47

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLN+NP+TTS+ NLK+AIEEVS IPVSLQRLFLSQSF +SD +DSTLLSHVRV PNST+TLHVPLYGG        +Q  +I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

XP_022970703.1 protein STABILIZED1 [Cucurbita maxima]

2.2e-27

68.47

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLN+NP+TTS+ NLK AIEEVS IPVSLQRLFLSQSF +SD +DSTLLSHVRV PNST+TLHVPLYGG        +Q  +I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

XP_023532967.1 protein STABILIZED1 [Cucurbita pepo subsp. pepo]

2.9e-27

67.57

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLN+NP++TS+ NLK+AIEEVS IPVSLQRLFLSQSF +SD +DSTLLSHVRV PNST+TLHVPLYGG        +Q  +I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

XP_038907061.1 protein STABILIZED1 [Benincasa hispida]

1.3e-27

70.27

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLNLNPATTS+ NLK AIEEVS IPVS QRLFLSQSF LS F+DSTLLSHVR+ PNSTLTLHVPLYGG        +Q   I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAH3 protein STABILIZED1

4.1e-27

66.67

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLNLNP+TTS+ NLK+AIEEVS IP+S QRLFLSQSF LS F+DSTLLSH+R+ PNSTLTLHVPL+GG        +Q   I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

A0A5A7TA27 Protein STABILIZED1

4.1e-27

66.67

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLNLNP+TTS+ NLK+AIEEVS IP+S QRLFLSQSF LS F+DSTLLSH+R+ PNSTLTLHVPL+GG        +Q   I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

A0A6J1CG40 protein STABILIZED1

4.5e-34

79.28

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVS IPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGG        +Q   I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

A0A6J1G7D8 protein STABILIZED1

4.8e-28

68.47

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLN+NP+TTS+ NLK+AIEEVS IPVSLQRLFLSQSF +SD +DSTLLSHVRV PNST+TLHVPLYGG        +Q  +I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

A0A6J1I4P8 protein STABILIZED1

1.1e-27

68.47

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-
        MVFL+IPNQKTLFLN+NP+TTS+ NLK AIEEVS IPVSLQRLFLSQSF +SD +DSTLLSHVRV PNST+TLHVPLYGG        +Q  +I   RL 
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRL-

Query:  -LEGPPPPQPV
         L   PPP  V
Subjt:  -LEGPPPPQPV

SwissProt top hits

e value

%identity

Alignment

Q9ZT71 Protein STABILIZED1

7.7e-07

40.7

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFL-----SQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGL
        MVFL+IPN KTL +++NP +T++   +Q   + S +P S  R  L     S+ F+ S   DS LLS + V   ST+ +HV L GG+
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFL-----SQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGL

Arabidopsis top hits

e value

%identity

Alignment

AT4G03430.1 pre-mRNA splicing factor-related

5.4e-08

40.7

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Query:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFL-----SQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGL
        MVFL+IPN KTL +++NP +T++   +Q   + S +P S  R  L     S+ F+ S   DS LLS + V   ST+ +HV L GG+
Subjt:  MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFL-----SQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGL

Sequences

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CDS sequence

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ATGGTGTTCCTTACGATCCCCAACCAAAAAACCCTATTCCTTAACCTAAACCCCGCCACTACTTCCCTTCATAACCTGAAGCAGGCAATCGAGGAGGTTTCCCAGATACC
CGTTTCCCTTCAGCGCTTGTTCTTATCCCAAAGCTTCATATTATCAGATTTCGATGATTCTACGTTGCTCTCCCATGTTCGAGTCCAACCCAATTCAACTCTAACGCTTC
ACGTTCCCTTATACGGAGGTCTGATATTGGTCCGGCTCGAGCTGCTCCAGACCTTCCTGATAGGTCCGCGACGACTATTGGAGGGGCCGCCGCCGCCCCAGCCGGTAGAG
GCCGTGGAAAAGGTGGGGAGGAAGAGGAAGAAGATGAAGGAGAGGACAAAGGATATGATGAGAATCAGAAGTTTGATGAATTCGAAGGCAACGATGTAG

mRNA sequence

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Protein sequence

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MVFLTIPNQKTLFLNLNPATTSLHNLKQAIEEVSQIPVSLQRLFLSQSFILSDFDDSTLLSHVRVQPNSTLTLHVPLYGGLILVRLELLQTFLIGPRRLLEGPPPPQPVE
AVEKVGRKRKKMKERTKDMMRIRSLMNSKATM

Moc02g06030 (gene) of Bitter gourd (OHB3-1) v2 genome