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Moc02g06540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g06540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr2:4634232..4634992
RNA-Seq ExpressionMoc02g06540
SyntenyMoc02g06540
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604761.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2871.28Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSG +P+ VALGAVLTA KH GLVKEGM+LF+KMKVEY VE +M+HYQCLVDLL       E EK+I ++PFPPDA LWRSFLEGCKR++TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

XP_022133878.1 pentatricopeptide repeat-containing protein At3g58590-like [Momordica charantia]3.6e-3479.79Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSGFRP+ VALGAVLTACKH GLVKEGM+LF+KMKV+Y +E +MNHYQCLVDLL    +AA  EKLIVT+PFPPDAFLWRSFLEGCKRQ+TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

XP_022947134.1 pentatricopeptide repeat-containing protein At3g58590 [Cucurbita moschata]5.3e-3072.34Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSG +P+ VALGAVLTACKH GLVKEGM+LF+KMKVEY VE +M+HYQCLVDLL       E EK+I ++PFPPDA LWRSFLEGCKR++TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

XP_022971166.1 pentatricopeptide repeat-containing protein At3g58590 [Cucurbita maxima]5.3e-3072.34Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSG +P+ VALGAVLTACKH GLVKEGM+LF+KMKVEY VE +M+HYQCLVDLL       E EK+I ++PFPPDA LWRSFLEGCKR++TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

XP_023532810.1 pentatricopeptide repeat-containing protein At3g58590 [Cucurbita pepo subsp. pepo]2.0e-2970.21Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPN---AAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSG +P+ VALGAVLTACKH GLVKEGM+LF KMKVEY VE +M+HYQC+V+LL       E EK+I ++PFPPDA LWRSFLEGCKR++TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPN---AAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

TrEMBL top hitse value%identityAlignment
A0A1S3C2S6 pentatricopeptide repeat-containing protein At3g585905.4e-2868.09Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MEL G +P+ VAL AVLTACKH GLV+EGM+LF+KMKV+Y VE +MNHYQC+VDLL    +  E EK+I ++PFPPDA LWR FLEGCKRQ+TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

A0A5A7UHJ9 Pentatricopeptide repeat-containing protein5.4e-2868.09Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MEL G +P+ VAL AVLTACKH GLV+EGM+LF+KMKV+Y VE +MNHYQC+VDLL    +  E EK+I ++PFPPDA LWR FLEGCKRQ+TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

A0A6J1C0G3 pentatricopeptide repeat-containing protein At3g58590-like1.7e-3479.79Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSGFRP+ VALGAVLTACKH GLVKEGM+LF+KMKV+Y +E +MNHYQCLVDLL    +AA  EKLIVT+PFPPDAFLWRSFLEGCKRQ+TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

A0A6J1G5W7 pentatricopeptide repeat-containing protein At3g585902.6e-3072.34Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSG +P+ VALGAVLTACKH GLVKEGM+LF+KMKVEY VE +M+HYQCLVDLL       E EK+I ++PFPPDA LWRSFLEGCKR++TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

A0A6J1I2K3 pentatricopeptide repeat-containing protein At3g585902.6e-3072.34Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL
        MELSG +P+ VALGAVLTACKH GLVKEGM+LF+KMKVEY VE +M+HYQCLVDLL       E EK+I ++PFPPDA LWRSFLEGCKR++TL
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLP---NAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTL

SwissProt top hitse value%identityAlignment
O49287 Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial1.9e-1443.18Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAAETEK---LIVTLPFPPDAFLWRSFLEGC
        M ++G RP  +    VLTAC + GLV+EG KLF  MKV++    D  H+ C+VDLL  A   E+   L+  +PF  D  +W S L GC
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAAETEK---LIVTLPFPPDAFLWRSFLEGC

Q0WN01 Pentatricopeptide repeat-containing protein At3g585902.0e-1954.65Show/hide
Query:  GFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPN---AAETEKLIVTLPFPPDAFLWRSFLEGCKR
        GF+P+ V+  ++LTAC+H G+VKEGM LF KMK +Y VE +M+HY+C VDLL       E E LI  +PFP DA +WR+FL+GC R
Subjt:  GFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPN---AAETEKLIVTLPFPPDAFLWRSFLEGCKR

Q9FJY7 Pentatricopeptide repeat-containing protein At5g665204.5e-1634.68Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAA---ETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQTRLEI
        M+  G +PNV+   AVLTAC ++GLV+EG  +F  M+ +Y ++  + HY C+VDLL  A    E ++ I  +P  P+A +W + L+ C+  K ++   EI
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAA---ETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQTRLEI

Query:  ADLRVDDMAALGKPYTTKSKPPAM
         ++ +      G  Y  K+   AM
Subjt:  ADLRVDDMAALGKPYTTKSKPPAM

Q9FXA9 Putative pentatricopeptide repeat-containing protein At1g565705.0e-1543.48Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQK
        M  SG RP+ +   AVL+AC+H+GLV++G+K FN M+ EY +  D + Y C+VDLL  A    E  +L+  +PF PD   W + L  CK  K
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQK

Q9SS60 Pentatricopeptide repeat-containing protein At3g035805.9e-1638.74Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQT----
        ME SG  P+ V   A++ AC HSGLV EG+  F KMK  Y+++  + HY C+VDLL  +   ++ E+ I  +P  PDA +W S L  C+    ++T    
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQT----

Query:  RLEIADLRVDD
           I +L  DD
Subjt:  RLEIADLRVDD

Arabidopsis top hitse value%identityAlignment
AT1G56570.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.6e-1643.48Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQK
        M  SG RP+ +   AVL+AC+H+GLV++G+K FN M+ EY +  D + Y C+VDLL  A    E  +L+  +PF PD   W + L  CK  K
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQK

AT1G77010.1 Pentatricopeptide repeat (PPR) superfamily protein1.4e-1543.18Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAAETEK---LIVTLPFPPDAFLWRSFLEGC
        M ++G RP  +    VLTAC + GLV+EG KLF  MKV++    D  H+ C+VDLL  A   E+   L+  +PF  D  +W S L GC
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAAETEK---LIVTLPFPPDAFLWRSFLEGC

AT3G03580.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.2e-1738.74Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQT----
        ME SG  P+ V   A++ AC HSGLV EG+  F KMK  Y+++  + HY C+VDLL  +   ++ E+ I  +P  PDA +W S L  C+    ++T    
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNA---AETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQT----

Query:  RLEIADLRVDD
           I +L  DD
Subjt:  RLEIADLRVDD

AT3G58590.1 Pentatricopeptide repeat (PPR) superfamily protein1.4e-2054.65Show/hide
Query:  GFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPN---AAETEKLIVTLPFPPDAFLWRSFLEGCKR
        GF+P+ V+  ++LTAC+H G+VKEGM LF KMK +Y VE +M+HY+C VDLL       E E LI  +PFP DA +WR+FL+GC R
Subjt:  GFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPN---AAETEKLIVTLPFPPDAFLWRSFLEGCKR

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.2e-1734.68Show/hide
Query:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAA---ETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQTRLEI
        M+  G +PNV+   AVLTAC ++GLV+EG  +F  M+ +Y ++  + HY C+VDLL  A    E ++ I  +P  P+A +W + L+ C+  K ++   EI
Subjt:  MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAA---ETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQTRLEI

Query:  ADLRVDDMAALGKPYTTKSKPPAM
         ++ +      G  Y  K+   AM
Subjt:  ADLRVDDMAALGKPYTTKSKPPAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTATCAGGGTTTAGACCTAACGTGGTAGCTCTTGGTGCAGTGCTTACAGCTTGCAAGCACAGCGGGCTTGTTAAAGAAGGAATGAAGTTGTTCAACAAGATGAA
AGTGGAATACAGGGTCGAACTAGACATGAATCATTATCAGTGCCTGGTTGACTTGCTTCCTAATGCTGCGGAAACAGAGAAGTTGATTGTCACCTTGCCTTTTCCTCCTG
ATGCTTTTCTATGGCGTAGCTTCCTGGAAGGCTGCAAAAGACAAAAGACCTTACAGACCAGATTGGAAATCGCAGACCTTAGGGTGGATGACATGGCTGCATTAGGTAAG
CCTTACACCACAAAATCTAAACCTCCAGCAATGCAACCTACAGTGCCATGCCATTCCCAGCCCTTCTTGGGGGTCCCTGCCCTTACAATTAGGTCCTTTGCCCATTTTTT
CCAACTTGGATATACATCAGTACGACTTGGTGAAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTATCAGGGTTTAGACCTAACGTGGTAGCTCTTGGTGCAGTGCTTACAGCTTGCAAGCACAGCGGGCTTGTTAAAGAAGGAATGAAGTTGTTCAACAAGATGAA
AGTGGAATACAGGGTCGAACTAGACATGAATCATTATCAGTGCCTGGTTGACTTGCTTCCTAATGCTGCGGAAACAGAGAAGTTGATTGTCACCTTGCCTTTTCCTCCTG
ATGCTTTTCTATGGCGTAGCTTCCTGGAAGGCTGCAAAAGACAAAAGACCTTACAGACCAGATTGGAAATCGCAGACCTTAGGGTGGATGACATGGCTGCATTAGGTAAG
CCTTACACCACAAAATCTAAACCTCCAGCAATGCAACCTACAGTGCCATGCCATTCCCAGCCCTTCTTGGGGGTCCCTGCCCTTACAATTAGGTCCTTTGCCCATTTTTT
CCAACTTGGATATACATCAGTACGACTTGGTGAAATATAA
Protein sequenceShow/hide protein sequence
MELSGFRPNVVALGAVLTACKHSGLVKEGMKLFNKMKVEYRVELDMNHYQCLVDLLPNAAETEKLIVTLPFPPDAFLWRSFLEGCKRQKTLQTRLEIADLRVDDMAALGK
PYTTKSKPPAMQPTVPCHSQPFLGVPALTIRSFAHFFQLGYTSVRLGEI