; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc02g07660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g07660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:5498787..5499479
RNA-Seq ExpressionMoc02g07660
SyntenyMoc02g07660
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK19020.1 uncharacterized protein E5676_scaffold154G00460 [Cucumis melo var. makuwa]1.3e-6456.28Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM
        MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLPIQ++  RV+ LE  + A R  ++ERG+SS+     +E R+
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM

Query:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK
        GEL+N+  T++++ N M+EDF+VT+D +R E+ +++ R++LTMRA+ NQAP    +  +K+KVPEPKPF G RD K LEN++FD+EQYFKAT T +E+ K
Subjt:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK

Query:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN
        VTLATMHL++DAKLWWRS+  DIQ GRCT++
Subjt:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN

TYK19839.1 uncharacterized protein E5676_scaffold811G00460 [Cucumis melo var. makuwa]5.6e-6556.28Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM
        MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLPIQ++  RV+ LE  + A R  ++ERG+SS+     +E R+
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM

Query:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK
        GEL+N+  T++++ N M+EDF+VT+D +R E+ +++ R++LTMRA+ NQAP    +  +K+KVPEPKPF G RD K LEN++FD+EQYFKAT T +E+ K
Subjt:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK

Query:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN
        VTLATMHL++DAKLWWRS+  DIQ GRCT++
Subjt:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN

TYK29292.1 uncharacterized protein E5676_scaffold1212G00600 [Cucumis melo var. makuwa]7.4e-6556.28Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM
        MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLPIQ++  RV+ LE  + A R  ++ERG+SS+     +E R+
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM

Query:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK
        GEL+N+  T++++ N M+EDF+VT+D +R E+ +++ R++LTMRA+ NQAP    +  +K+KVPEPKPF G RD K LEN++FD+EQYFKAT T +E+ K
Subjt:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK

Query:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN
        VTLATMHL++DAKLWWRS+  DIQ GRCT++
Subjt:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]3.6e-12097.39Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE
        MSTTKQLSKSHVDRLVEIEEQLLYLREVPD LRLLEARVDEFSEKFGEIDAVNAR+DGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE

Query:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT
        LNNSHS MMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRD KDLENFLFDVEQYFKATGTTSE+MKVT
Subjt:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT

Query:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN
        LATMHLTDDAKLWWRSKVNDIQNGRCTIN+
Subjt:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]8.3e-11795.65Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE
        MS TKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVET ESKATRPGSFERGDSSTNPNTQIEVRMGE
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE

Query:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT
        LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQ NMGFNKLKVPEPKPFNGNR  KDLENF FDVEQYFK TGT SE MKVT
Subjt:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT

Query:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN
        LATMHLTDDAKLWWRSKVNDIQNGRCTIN+
Subjt:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN

TrEMBL top hitse value%identityAlignment
A0A5D3D672 Retrotrans_gag domain-containing protein6.1e-6556.28Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM
        MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLPIQ++  RV+ LE  + A R  ++ERG+SS+     +E R+
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM

Query:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK
        GEL+N+  T++++ N M+EDF+VT+D +R E+ +++ R++LTMRA+ NQAP    +  +K+KVPEPKPF G RD K LEN++FD+EQYFKAT T +E+ K
Subjt:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK

Query:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN
        VTLATMHL++DAKLWWRS+  DIQ GRCT++
Subjt:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN

A0A5D3D8P6 Retrotrans_gag domain-containing protein2.7e-6556.28Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM
        MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLPIQ++  RV+ LE  + A R  ++ERG+SS+     +E R+
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM

Query:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK
        GEL+N+  T++++ N M+EDF+VT+D +R E+ +++ R++LTMRA+ NQAP    +  +K+KVPEPKPF G RD K LEN++FD+EQYFKAT T +E+ K
Subjt:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK

Query:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN
        VTLATMHL++DAKLWWRS+  DIQ GRCT++
Subjt:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN

A0A5D3E078 Retrotrans_gag domain-containing protein3.6e-6556.28Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM
        MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLPIQ++  RV+ LE  + A R  ++ERG+SS+     +E R+
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRM

Query:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK
        GEL+N+  T++++ N M+EDF+VT+D +R E+ +++ R++LTMRA+ NQAP    +  +K+KVPEPKPF G RD K LEN++FD+EQYFKAT T +E+ K
Subjt:  GELNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMK

Query:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN
        VTLATMHL++DAKLWWRS+  DIQ GRCT++
Subjt:  VTLATMHLTDDAKLWWRSKVNDIQNGRCTIN

A0A6J1D906 Reverse transcriptase1.7e-12097.39Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE
        MSTTKQLSKSHVDRLVEIEEQLLYLREVPD LRLLEARVDEFSEKFGEIDAVNAR+DGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE

Query:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT
        LNNSHS MMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRD KDLENFLFDVEQYFKATGTTSE+MKVT
Subjt:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT

Query:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN
        LATMHLTDDAKLWWRSKVNDIQNGRCTIN+
Subjt:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN

A0A6J1DK29 uncharacterized protein LOC1110218294.0e-11795.65Show/hide
Query:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE
        MS TKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVET ESKATRPGSFERGDSSTNPNTQIEVRMGE
Subjt:  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGE

Query:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT
        LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQ NMGFNKLKVPEPKPFNGNR  KDLENF FDVEQYFK TGT SE MKVT
Subjt:  LNNSHSTMMQLFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVT

Query:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN
        LATMHLTDDAKLWWRSKVNDIQNGRCTIN+
Subjt:  LATMHLTDDAKLWWRSKVNDIQNGRCTINN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACGACAAAACAACTGAGCAAGTCGCACGTCGACCGACTAGTAGAGATAGAAGAACAACTTCTCTACCTAAGAGAAGTCCCTGATTCCCTCCGTCTGCTGGAGGC
GCGAGTTGATGAATTCTCCGAGAAGTTTGGAGAAATAGACGCAGTGAATGCCCGTGTAGACGGGTTGCCGATACAAGATATAGCCATGAGGGTTGAGACCCTAGAAAGCA
AAGCTACACGTCCTGGTAGCTTCGAACGTGGAGATAGTTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGAGAGTTAAACAACTCGCATTCGACAATGATGCAA
TTGTTTAACGAAATGACAGAAGACTTCAAAGTGACCATCGACACCCTCCGAGCTGAGATGACGGAAATAAGCACTAGAGTGAACCTAACCATGCGAGCCGTGGGAAATCA
AGCTCCCAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTCAATGGCAATAGAGACGTCAAAGATCTCGAGAACTTCCTGTTCGACGTAG
AACAGTACTTCAAGGCTACAGGGACAACGTCAGAAAAGATGAAAGTGACTTTGGCCACCATGCATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGAC
ATTCAGAATGGTCGATGCACGATCAATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACGACAAAACAACTGAGCAAGTCGCACGTCGACCGACTAGTAGAGATAGAAGAACAACTTCTCTACCTAAGAGAAGTCCCTGATTCCCTCCGTCTGCTGGAGGC
GCGAGTTGATGAATTCTCCGAGAAGTTTGGAGAAATAGACGCAGTGAATGCCCGTGTAGACGGGTTGCCGATACAAGATATAGCCATGAGGGTTGAGACCCTAGAAAGCA
AAGCTACACGTCCTGGTAGCTTCGAACGTGGAGATAGTTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGAGAGTTAAACAACTCGCATTCGACAATGATGCAA
TTGTTTAACGAAATGACAGAAGACTTCAAAGTGACCATCGACACCCTCCGAGCTGAGATGACGGAAATAAGCACTAGAGTGAACCTAACCATGCGAGCCGTGGGAAATCA
AGCTCCCAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTCAATGGCAATAGAGACGTCAAAGATCTCGAGAACTTCCTGTTCGACGTAG
AACAGTACTTCAAGGCTACAGGGACAACGTCAGAAAAGATGAAAGTGACTTTGGCCACCATGCATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGAC
ATTCAGAATGGTCGATGCACGATCAATAACTGA
Protein sequenceShow/hide protein sequence
MSTTKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSTMMQ
LFNEMTEDFKVTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDVKDLENFLFDVEQYFKATGTTSEKMKVTLATMHLTDDAKLWWRSKVND
IQNGRCTINN