; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc02g09330 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g09330
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptiontRNA-intron lyase
Genome locationchr2:6618905..6624807
RNA-Seq ExpressionMoc02g09330
SyntenyMoc02g09330
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0006412 - translation (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005680 - Ribosomal protein S23, eukaryotic/archaeal
IPR006032 - Ribosomal protein S12/S23
IPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR012340 - Nucleic acid-binding, OB-fold
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605517.1 tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp. sororia]6.1e-11989.92Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MG RWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQ +L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS HL CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G  NENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

XP_022146301.1 tRNA-splicing endonuclease subunit Sen2-1 [Momordica charantia]2.4e-136100Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

XP_022947592.1 tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata]1.2e-11989.92Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQ +L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

XP_022947593.1 tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata]1.2e-11989.92Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQ +L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

XP_023532286.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo]3.8e-12190.76Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQ +L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS HL CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

TrEMBL top hitse value%identityAlignment
A0A6J1CYW3 tRNA-intron lyase1.2e-136100Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

A0A6J1FWV5 tRNA-intron lyase3.8e-11988.7Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGK SEA+ALADPMSKIVLQLQSSLTQSDAQGLLSGCS+LYQADEEQTDL NRACFGR I+TA+KDKQWFQ G+EEAFYLS HL CLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW+ MKS+KATFPEFY AYQHLRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNEN RLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        SVN+NGS SVSPS LD+YSIEERTVTRWSPEQCRENP K
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

A0A6J1G6W2 tRNA-intron lyase5.9e-12089.92Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQ +L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

A0A6J1G716 tRNA-intron lyase5.9e-12089.92Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQ +L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

A0A6J1JBL2 tRNA-intron lyase5.0e-11988.7Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWKGK SEA+ALADPMSKIVLQLQSSLTQSDAQGLLSGCS+LYQADEEQTDL NRACFGR I+TAD DKQWFQ G+EEAFYLS HL CLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW+ MKSQKATFPEFY AYQHLRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        SVN+NG+ SVSPS LDS+SIEERTVTRWSPEQCRENP K
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S238.1e-7497.87Show/hide
Query:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
        MGKTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
Subjt:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL

Query:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
        IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Subjt:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR

P49201 40S ribosomal protein S23-22.9e-7196.45Show/hide
Query:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
        MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
Subjt:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL

Query:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
        IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Subjt:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-27.8e-6955.46Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQ +L +R CFGR +++A+K K+W QL  EEAF+L  +LKC+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         +N    W YMKS++  FP F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVWSD  C +RL GSVAKTLL L
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN
         VN N  G        L+++++EE+T++RWSPE  RE+
Subjt:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-12.1e-6956.2Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD
        M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+ +L +R CFGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD

Query:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV
         E N   LW  M S K  F   YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+VWSD  C++RL GSVAK+LLV
Subjt:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV

Query:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        L VN   N      P  L+ Y++EE+T+ RWSPE  RE+  +
Subjt:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

Q9M5Z9 40S ribosomal protein S236.8e-7397.16Show/hide
Query:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
        MGKT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
Subjt:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL

Query:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
        IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Subjt:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR

Arabidopsis top hitse value%identityAlignment
AT3G45590.1 splicing endonuclease 11.5e-7056.2Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD
        M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+ +L +R CFGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD

Query:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV
         E N   LW  M S K  F   YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+VWSD  C++RL GSVAK+LLV
Subjt:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV

Query:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        L VN   N      P  L+ Y++EE+T+ RWSPE  RE+  +
Subjt:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

AT3G45590.2 splicing endonuclease 11.5e-7056.2Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD
        M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+ +L +R CFGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD

Query:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV
         E N   LW  M S K  F   YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+VWSD  C++RL GSVAK+LLV
Subjt:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV

Query:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        L VN   N      P  L+ Y++EE+T+ RWSPE  RE+  +
Subjt:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

AT5G02960.1 Ribosomal protein S12/S23 family protein2.0e-7296.45Show/hide
Query:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
        MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
Subjt:  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL

Query:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
        IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Subjt:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR

AT5G60230.1 splicing endonuclease 25.5e-7055.46Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQ +L +R CFGR +++A+K K+W QL  EEAF+L  +LKC+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         +N    W YMKS++  FP F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVWSD  C +RL GSVAKTLL L
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN
         VN N  G        L+++++EE+T++RWSPE  RE+
Subjt:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN

AT5G60230.2 splicing endonuclease 25.5e-7055.46Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQ +L +R CFGR +++A+K K+W QL  EEAF+L  +LKC+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         +N    W YMKS++  FP F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVWSD  C +RL GSVAKTLL L
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN
         VN N  G        L+++++EE+T++RWSPE  RE+
Subjt:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCCAAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTAACACAATCGGACGCTCAGGG
ACTATTGTCCGGATGTAGTGTACTTTATCAAGCAGATGAAGAACAAACCGATCTTTTCAATCGCGCTTGTTTCGGTCGACCCATTGTTACAGCCGATAAGGATAAGCAAT
GGTTTCAATTGGGCGTGGAGGAGGCGTTTTACTTGTCCTGTCATTTGAAATGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATGCTGAACAGCTGTGGGAGTAT
ATGAAGTCCCAAAAGGCTACGTTCCCTGAGTTTTACAAGGCTTATCAACATCTCCGGATGAAGAATTGGGTTGTCAGACCTGGATCTCAATACGGGGTTGATTTTGTGGC
TTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGAGACAGTAACGAAAATGGGCGATTGAGAGTTTGGTCTGATTTTC
TCTGCACAATTCGGCTCTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATAACAATGGAAGCAGTTCTGTTTCTCCTTCATTTTTGGACAGCTACTCCATT
GAAGAACGTACGGTTACAAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAATTTTTGGTGCGGCGGGGTGGTATGGAGAAGCAAATCTTTGCAAAATCTTCAGA
TATTGCTCAAGGATGTGAAGCAAACGACGTTGCGGCGGCGTCATCCAGAGCAGCTTCATCGGAACTCCGCTACCCTAATCTCGCAGTCGGAGATCATCTTCTCACCCTCA
CAATGGGGAAGACACGTGGAATGGGAGCTGGTCGCAAGTTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGG
AAGAAGCCATTTGCTGGATCGTCACATGCAAAAGGCATCGTCCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGGAAGTGTGCTAGAGTTCAACT
TATTAAGAACGGGAAGAAGATCGCGGCCTTTGTCCCAAATGATGGTTGTTTGAACTACATTGAAGAGAATGACGAGGTTCTCATTGCTGGATTTGGCCGAAAAGGACATG
CTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTGTCAGGTGTATCTCTTCTGGCTCTCTTTAAGGAAAAGAAGGAGAAGCCAAGATTGGCCCCAAAAAGT
AAGGATGCCCAATTAGGTTCTGTGAGATGGGACGTTCTTTTGTTAGGAACAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCCAAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTAACACAATCGGACGCTCAGGG
ACTATTGTCCGGATGTAGTGTACTTTATCAAGCAGATGAAGAACAAACCGATCTTTTCAATCGCGCTTGTTTCGGTCGACCCATTGTTACAGCCGATAAGGATAAGCAAT
GGTTTCAATTGGGCGTGGAGGAGGCGTTTTACTTGTCCTGTCATTTGAAATGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATGCTGAACAGCTGTGGGAGTAT
ATGAAGTCCCAAAAGGCTACGTTCCCTGAGTTTTACAAGGCTTATCAACATCTCCGGATGAAGAATTGGGTTGTCAGACCTGGATCTCAATACGGGGTTGATTTTGTGGC
TTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGAGACAGTAACGAAAATGGGCGATTGAGAGTTTGGTCTGATTTTC
TCTGCACAATTCGGCTCTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATAACAATGGAAGCAGTTCTGTTTCTCCTTCATTTTTGGACAGCTACTCCATT
GAAGAACGTACGGTTACAAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAATTTTTGGTGCGGCGGGGTGGTATGGAGAAGCAAATCTTTGCAAAATCTTCAGA
TATTGCTCAAGGATGTGAAGCAAACGACGTTGCGGCGGCGTCATCCAGAGCAGCTTCATCGGAACTCCGCTACCCTAATCTCGCAGTCGGAGATCATCTTCTCACCCTCA
CAATGGGGAAGACACGTGGAATGGGAGCTGGTCGCAAGTTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGG
AAGAAGCCATTTGCTGGATCGTCACATGCAAAAGGCATCGTCCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGGAAGTGTGCTAGAGTTCAACT
TATTAAGAACGGGAAGAAGATCGCGGCCTTTGTCCCAAATGATGGTTGTTTGAACTACATTGAAGAGAATGACGAGGTTCTCATTGCTGGATTTGGCCGAAAAGGACATG
CTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTGTCAGGTGTATCTCTTCTGGCTCTCTTTAAGGAAAAGAAGGAGAAGCCAAGATTGGCCCCAAAAAGT
AAGGATGCCCAATTAGGTTCTGTGAGATGGGACGTTCTTTTGTTAGGAACAAGGTGA
Protein sequenceShow/hide protein sequence
MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEY
MKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSI
EERTVTRWSPEQCRENPAKFLVRRGGMEKQIFAKSSDIAQGCEANDVAAASSRAASSELRYPNLAVGDHLLTLTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEW
KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRLAPKS
KDAQLGSVRWDVLLLGTR