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Moc02g10660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g10660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein RADIALIS-like 2
Genome locationchr2:7566607..7566888
RNA-Seq ExpressionMoc02g10660
SyntenyMoc02g10660
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8536101.1 hypothetical protein F0562_028579 [Nyssa sinensis]4.3e-3276.34Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        MA+MSSR  SGSWT  QNKAFE+ALA++DKDTPDRWHNVA AVGGKT +EVKRH+++LVED+KHIE G +PFPNY  TT GSS GNVNDEEKR
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

KAG6571113.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3176.04Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNY--TATTTGSSNGNVNDEEKR
        MA+MSS   S SWTP QNKAFERALAVFDKDTPDRW NVA AV GGKT DEVK HFDLLVEDVKHIESG +PFPNY  TA+ +G+SN N+ND+E+R
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNY--TATTTGSSNGNVNDEEKR

KAG6571117.1 Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3176.04Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNY--TATTTGSSNGNVNDEEKR
        MA+MSS   S SWTP QNKAFERALAVFDKDTPDRW NVA AV GGKT DEVK HFDLLVEDVKHIESG +PFPNY  TA+ +G+SN N+ND+E+R
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNY--TATTTGSSNGNVNDEEKR

XP_022146256.1 protein RADIALIS-like 2 [Momordica charantia]9.0e-46100Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]2.5e-3582.29Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTT--GSSNGNVNDEEKR
        MA++SS   SGSWTPNQNKAFERALAVFDKDTPDRW NVANAV GGKTADEVKRHFDLLVEDVKHIESGR+PFPNYT+T+T   S NGN+ND+E+R
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTT--GSSNGNVNDEEKR

TrEMBL top hitse value%identityAlignment
A0A2P5EKH9 Octamer-binding transcription factor1.0e-3175Show/hide
Query:  AAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        ++MSSR SS SWT  QNKAFE+ALAV+DKDTPDRW+NVA AVGGKT +EVKRH++LLVEDVKHIESG++PFPNY  TT GSS GN +D+EKR
Subjt:  AAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

A0A5B6ZFE1 SANT domain-containing protein3.6e-3275.27Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        MA+MSSR  SGSWT  QNKAFE+ALAV DKDTPDRWHNVA AVGGKTA+EVKRH+++LVEDVKHIE G++PFPNY  T   S  GN+NDEEKR
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

A0A5J5B4N4 SANT domain-containing protein2.1e-3276.34Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        MA+MSSR  SGSWT  QNKAFE+ALA++DKDTPDRWHNVA AVGGKT +EVKRH+++LVED+KHIE G +PFPNY  TT GSS GNVNDEEKR
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

A0A6J1CYR5 protein RADIALIS-like 24.4e-46100Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

A0A6J1FXX9 protein RADIALIS-like 21.4e-3175Show/hide
Query:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNY--TATTTGSSNGNVNDEEKR
        MA+M+S   S SWTP QNKAFERALAVFDKDTPDRW NVA AV GGKT DEVK HFDLLVEDVKHIESG +PFPNY  TA+ +G+SN N+ND+E+R
Subjt:  MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVKHIESGRIPFPNY--TATTTGSSNGNVNDEEKR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.4e-2761.7Show/hide
Query:  MAAMS-SRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        MA+ S S  SSGSWT  QNKAFE+ALA +D+DTP+RW NVA  VGGKT +EVKRH++LLV+D+  IE+G +PFPNY  T+ G +NG ++ EEKR
Subjt:  MAAMS-SRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

Q1A173 Protein RADIALIS-like 63.7e-2662.64Show/hide
Query:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        A +SR S   WT +QNK FERALAV+DKDTPDRWHNVA AVGGKT +EVKRH+D+LVED+ +IE+GR+P PNY   T  S++ ++ND + R
Subjt:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

Q58FS3 Transcription factor RADIALIS3.1e-2559.55Show/hide
Query:  SSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        S+R S   W+  +NKAFERALAV+DKDTPDRW NVA AV G+T +EVK+H+++LVED+K+IESG++PFPNY  T      GN+  +EKR
Subjt:  SSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

Q8GW75 Protein RADIALIS-like 51.6e-2458.24Show/hide
Query:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        A SS  SS SWT  QNK FERALAV+DKDTPDRW NVA AVG K+A+EVKRH+D+LVED+ +IE   +P P Y     GS +  ++D + R
Subjt:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

Q9SIJ5 Protein RADIALIS-like 28.0e-2967.86Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        SGSWT  QNKAFERALAV+D+DTPDRWHNVA AVGGKT +E KR +DLLV D++ IE+G +PFP+Y  TT  S+ G + DEEKR
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2558.24Show/hide
Query:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        A SS  SS SWT  QNK FERALAV+DKDTPDRW NVA AVG K+A+EVKRH+D+LVED+ +IE   +P P Y     GS +  ++D + R
Subjt:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

AT1G75250.1 RAD-like 62.6e-2762.64Show/hide
Query:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        A +SR S   WT +QNK FERALAV+DKDTPDRWHNVA AVGGKT +EVKRH+D+LVED+ +IE+GR+P PNY   T  S++ ++ND + R
Subjt:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

AT1G75250.2 RAD-like 62.6e-2762.64Show/hide
Query:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        A +SR S   WT +QNK FERALAV+DKDTPDRWHNVA AVGGKT +EVKRH+D+LVED+ +IE+GR+P PNY   T  S++ ++ND + R
Subjt:  AMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

AT2G21650.1 Homeodomain-like superfamily protein5.6e-3067.86Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        SGSWT  QNKAFERALAV+D+DTPDRWHNVA AVGGKT +E KR +DLLV D++ IE+G +PFP+Y  TT  S+ G + DEEKR
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR

AT4G39250.1 RAD-like 15.3e-2861.7Show/hide
Query:  MAAMS-SRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR
        MA+ S S  SSGSWT  QNKAFE+ALA +D+DTP+RW NVA  VGGKT +EVKRH++LLV+D+  IE+G +PFPNY  T+ G +NG ++ EEKR
Subjt:  MAAMS-SRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCATGTCCTCTCGTGACTCTTCTGGCTCATGGACTCCAAACCAAAACAAGGCCTTCGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCA
CAATGTCGCCAACGCCGTCGGCGGCAAGACCGCCGACGAAGTCAAGAGGCATTTCGACCTTCTCGTCGAAGATGTCAAGCACATCGAATCCGGCCGCATTCCCTTCCCTA
ATTACACCGCCACCACCACCGGATCCTCCAATGGCAACGTCAATGACGAGGAAAAAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCATGTCCTCTCGTGACTCTTCTGGCTCATGGACTCCAAACCAAAACAAGGCCTTCGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCA
CAATGTCGCCAACGCCGTCGGCGGCAAGACCGCCGACGAAGTCAAGAGGCATTTCGACCTTCTCGTCGAAGATGTCAAGCACATCGAATCCGGCCGCATTCCCTTCCCTA
ATTACACCGCCACCACCACCGGATCCTCCAATGGCAACGTCAATGACGAGGAAAAAAGGTAG
Protein sequenceShow/hide protein sequence
MAAMSSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSNGNVNDEEKR