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Moc02g15380 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g15380
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:11462652..11463399
RNA-Seq ExpressionMoc02g15380
SyntenyMoc02g15380
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-2944.16Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS
        G+R++ DAAS   A ++ F+ P   W W   G S A  WE +  P    V W  L+W GGNI  HSF AWL ++DRL TRD   RWDSS+P S + C   
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS

Query:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        +ES DHL F  PF  +VWS ++  + SS+RI +W +E +W+ H   RK  RR++
Subjt:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-2944.16Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS
        G+R++ DAAS   A ++ F+ P   W W   G S A  WE +  P    V W  L+W GGNI  HSF AWL ++DRL TRD   RWDSS+P S + C   
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS

Query:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        +ES DHL F  PF  +VWS ++  + SS+RI +W +E +W+ H   RK  RR++
Subjt:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]6.9e-2944.16Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS
        G+R++ DAAS   A ++ F+ P   W W   G S A  WE +  P    V W  L+W GGNI  HSF AWL ++DRL TRD   RWDSS+P S + C   
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS

Query:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        +ES DHL F  PF  +VWS ++  + SS+RI +W +E +W+ H   RK  RR++
Subjt:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]3.3e-3169.47Show/hide
Query:  VFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIE
        V  P  P VPWFSLVWFGGNI  HSFIAWL +RDRLATRD L RWD S+  S VFC   ESWD+L FE PF+ EVWS MI W GSS RISYWS E
Subjt:  VFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIE

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]2.4e-3744.02Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRWHGVSADLWEL----------------------------------VFEPALPLVPWFSLVWFGGNISNHSFIA
        GDR+I D ASS+ AKV  FL P  SWRW  VS DL EL                                  +  P  P V +F L+WFGGNI  HSFI+
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRWHGVSADLWEL----------------------------------VFEPALPLVPWFSLVWFGGNISNHSFIA

Query:  WLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        WL +RDRL TR+ LR+W++ +P + VFCA LES DHL  + P++  VW+ MI W GSS+R+SYWS E  W+ H++    +RR V
Subjt:  WLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932253.3e-2944.16Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS
        G+R++ DAAS   A ++ F+ P   W W   G S A  WE +  P    V W  L+W GGNI  HSF AWL ++DRL TRD   RWDSS+P S + C   
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS

Query:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        +ES DHL F  PF  +VWS ++  + SS+RI +W +E +W+ H   RK  RR++
Subjt:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

A0A5A7UP65 Reverse transcriptase3.3e-2944.16Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS
        G+R++ DAAS   A ++ F+ P   W W   G S A  WE +  P    V W  L+W GGNI  HSF AWL ++DRL TRD   RWDSS+P S + C   
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS

Query:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        +ES DHL F  PF  +VWS ++  + SS+RI +W +E +W+ H   RK  RR++
Subjt:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

A0A5D3D7P6 Reverse transcriptase3.3e-2944.16Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS
        G+R++ DAAS   A ++ F+ P   W W   G S A  WE +  P    V W  L+W GGNI  HSF AWL ++DRL TRD   RWDSS+P S + C   
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRW--HGVS-ADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-AS

Query:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        +ES DHL F  PF  +VWS ++  + SS+RI +W +E +W+ H   RK  RR++
Subjt:  LESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

A0A6J1DTG0 uncharacterized protein LOC1110241651.6e-3169.47Show/hide
Query:  VFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIE
        V  P  P VPWFSLVWFGGNI  HSFIAWL +RDRLATRD L RWD S+  S VFC   ESWD+L FE PF+ EVWS MI W GSS RISYWS E
Subjt:  VFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIE

A0A6J1E271 uncharacterized protein LOC1110253241.1e-3744.02Show/hide
Query:  GDRIICDAASSTWAKVACFLFPYSSWRWHGVSADLWEL----------------------------------VFEPALPLVPWFSLVWFGGNISNHSFIA
        GDR+I D ASS+ AKV  FL P  SWRW  VS DL EL                                  +  P  P V +F L+WFGGNI  HSFI+
Subjt:  GDRIICDAASSTWAKVACFLFPYSSWRWHGVSADLWEL----------------------------------VFEPALPLVPWFSLVWFGGNISNHSFIA

Query:  WLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV
        WL +RDRL TR+ LR+W++ +P + VFCA LES DHL  + P++  VW+ MI W GSS+R+SYWS E  W+ H++    +RR V
Subjt:  WLVLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.9e-1446.15Show/hide
Query:  LVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASL-ESWDHLLFEFPFNSEVW
        L   P   +VPW+  VWF  ++  H+FI W+V  +RL TRD LR W  SIP   + C S  ES  HL FE PF   VW
Subjt:  LVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASL-ESWDHLLFEFPFNSEVW

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.3e-1142.03Show/hide
Query:  VPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASL-ESWDHLLFEFPFNSEVW
        V WF  +WF G I  H+FIAW+ +R RL T+D +  W    P   +FC +  E+  HL F+  F  EVW
Subjt:  VPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASL-ESWDHLLFEFPFNSEVW

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.5e-1035.8Show/hide
Query:  DLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASL-ESWDHLLFEFPFNSEV
        + W    EP L  V W+  VWF      +S +AW+ +++RL T D +  W++    S V C  L E+ DHL F  P+++EV
Subjt:  DLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCASL-ESWDHLLFEFPFNSEV

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.3e-1243.24Show/hide
Query:  PALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-ASLESWDHLLFEFPFNSEVW
        P    VPW   VWF  ++  H+FI W+V  +RL TRD L+ W  SIP   + C A  +S  HL FE  F+  VW
Subjt:  PALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFC-ASLESWDHLLFEFPFNSEVW

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.7e-1341.67Show/hide
Query:  SADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCAS-LESWDHLLFEFPFNSEVW
        S D WE +     P VPW  +VWF   I   S I W+   +RL TRD LR W  +IP S+V C++  E+  HL FE  F+  +W
Subjt:  SADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWLVLRDRLATRDHLRRWDSSIPDSYVFCAS-LESWDHLLFEFPFNSEVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTATATACTTTTGGGAGATTGTATTTGGACCGTTCGTGCTTCGCTCTGGTTCTCCTGGTGTTGGGGGGATATTCTTTCTGTCAGGGATACTTTTCAGCCTC
TGGTTTGGTGACAGAATTATCTGTGATGCTGCTAGCTCGACCTGGGCGAAGGTTGCTTGTTTTCTGTTTCCCTATAGTTCGTGGCGCTGGCATGGGGTGTCAGCT
GATCTTTGGGAGCTAGTCTTTGAGCCGGCCCTGCCTCTTGTTCCATGGTTTTCTTTGGTTTGGTTTGGTGGGAACATTTCGAATCATTCTTTCATTGCTTGGTTG
GTGTTGCGTGATCGGCTTGCTACGAGGGATCACTTACGTCGTTGGGACTCTTCCATTCCGGATTCCTATGTGTTCTGTGCTAGCCTGGAGTCTTGGGACCATTTG
TTATTTGAGTTCCCCTTTAATTCGGAGGTATGGTCTGACATGATTGTTTGGGTTGGTTCTTCTTATCGGATTTCATATTGGTCTATTGAGTTTGCTTGGGTTAGT
CACATTAGTGACAGGAAGTTTGCGCGTCGTCGTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTATATACTTTTGGGAGATTGTATTTGGACCGTTCGTGCTTCGCTCTGGTTCTCCTGGTGTTGGGGGGATATTCTTTCTGTCAGGGATACTTTTCAGCCTC
TGGTTTGGTGACAGAATTATCTGTGATGCTGCTAGCTCGACCTGGGCGAAGGTTGCTTGTTTTCTGTTTCCCTATAGTTCGTGGCGCTGGCATGGGGTGTCAGCT
GATCTTTGGGAGCTAGTCTTTGAGCCGGCCCTGCCTCTTGTTCCATGGTTTTCTTTGGTTTGGTTTGGTGGGAACATTTCGAATCATTCTTTCATTGCTTGGTTG
GTGTTGCGTGATCGGCTTGCTACGAGGGATCACTTACGTCGTTGGGACTCTTCCATTCCGGATTCCTATGTGTTCTGTGCTAGCCTGGAGTCTTGGGACCATTTG
TTATTTGAGTTCCCCTTTAATTCGGAGGTATGGTCTGACATGATTGTTTGGGTTGGTTCTTCTTATCGGATTTCATATTGGTCTATTGAGTTTGCTTGGGTTAGT
CACATTAGTGACAGGAAGTTTGCGCGTCGTCGTGTGTAG
Protein sequenceShow/hide protein sequence
MLIYFWEIVFGPFVLRSGSPGVGGIFFLSGILFSLWFGDRIICDAASSTWAKVACFLFPYSSWRWHGVSADLWELVFEPALPLVPWFSLVWFGGNISNHSFIAWL
VLRDRLATRDHLRRWDSSIPDSYVFCASLESWDHLLFEFPFNSEVWSDMIVWVGSSYRISYWSIEFAWVSHISDRKFARRRV