CuGenDBv2

Gene ID	Moc02g15530
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Eukaryotic translation initiation factor 6
Genome location	chr2:11683156..11688101
RNA-Seq Expression	Moc02g15530
Synteny	Moc02g15530
Gene Ontology terms	GO:0000054 - ribosomal subunit export from nucleus (biological process) GO:0000460 - maturation of 5.8S rRNA (biological process) GO:0000470 - maturation of LSU-rRNA (biological process) GO:0006413 - translational initiation (biological process) GO:0042256 - mature ribosome assembly (biological process) GO:1902626 - assembly of large subunit precursor of preribosome (biological process) GO:0005730 - nucleolus (cellular component) GO:0005829 - cytosol (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002769 - Translation initiation factor IF6

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7011104.1 Eukaryotic translation initiation factor 6-2 [Cucurbita argyrosperma subsp. argyrosperma]

3.1e-24

90.62

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

XP_022147757.1 eukaryotic translation initiation factor 6-2 [Momordica charantia]

3.1e-24

90.62

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

XP_022158453.1 eukaryotic translation initiation factor 6-2-like [Momordica charantia]

1.6e-25

96.88

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

XP_022931983.1 eukaryotic translation initiation factor 6-2-like [Cucurbita moschata]

3.1e-24

90.62

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

XP_022973842.1 eukaryotic translation initiation factor 6-2 [Cucurbita maxima]

3.1e-24

90.62

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D392 Eukaryotic translation initiation factor 6

1.5e-24

90.62

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

A0A6J1DW46 eukaryotic translation initiation factor 6-2-like

7.9e-26

96.88

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

A0A6J1F0A8 Eukaryotic translation initiation factor 6

1.5e-24

90.62

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

A0A6J1I8L9 Eukaryotic translation initiation factor 6

1.5e-24

90.62

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

A0A6J1L2F0 Eukaryotic translation initiation factor 6

7.4e-24

89.06

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RLMFENSCE+GVFSKLTNAYCLVAIGGSENFYS+FEAEL G+IPVVK SIDGTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

SwissProt top hits

e value

%identity

Alignment

O81920 Eukaryotic translation initiation factor 6 (Fragment)

1.3e-20

81.67

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIG
        +A+RL FEN+CEVGVFSKLTNAYCLVAIGGSENFYS FE EL   IPVVK SI GTRIIG
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIG

Q12522 Eukaryotic translation initiation factor 6

8.2e-20

73.44

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+R  FENS E+GVFSKLTN YCLVA+GGSENFYSAFEAELG  IP+V  +I GTRIIGR+ A
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

Q59L13 Eukaryotic translation initiation factor 6

2.4e-19

72.58

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRL
        +A+R  FENS EVGVFS LTN+YCLVA+GGSENFYSAFEAELG +IP+V  +I GTRI+GR+
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRL

Q9M060 Eukaryotic translation initiation factor 6-2

7.1e-24

82.81

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RL FEN+CEVGVFSKLTNAYCLVAIGGSENFYSAFE+EL  +IP+VK SI GTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

Q9TU47 Eukaryotic translation initiation factor 6

1.8e-19

71.43

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLC
        +A R  FEN+CE+G F+KLTN+YCLVAIGGSENFYS FE EL G IPVV  SI G RIIGR+C
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLC

Arabidopsis top hits

e value

%identity

Alignment

AT2G39820.1 Translation initiation factor IF6

1.2e-13

55.38

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Query:  LASRLMFE-NSCEVGVFSKLTNAYCLV-AIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLC
        +A+RL ++ N+CE+GVFSKLTNAYCLV A   S NF++ +E++L G+IP+V  SI G+  IG LC
Subjt:  LASRLMFE-NSCEVGVFSKLTNAYCLV-AIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLC

AT3G55620.1 Translation initiation factor IF6

5.1e-25

82.81

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Query:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA
        +A+RL FEN+CEVGVFSKLTNAYCLVAIGGSENFYSAFE+EL  +IP+VK SI GTRIIGRLCA
Subjt:  LASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRIIGRLCA

Sequences

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CDS sequence

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ATGGTGATTGGACAAAAATTTCTCAATGAGCTCTCTGTAAAGCTTAGAGAATGGCTCCCTCGAAAATGGCCTCCTGCTCTCAATCACGTCAGCATATCTGTTGGTGACGT
GGACGGTAAGCATTGGTGGAGACCAATGATAGTGTTGGGGATTTTGCTTGCAAGCCGGCTGATGTTTGAGAACTCATGTGAAGTTGGGGTTTTCTCCAAACTCACTAATG
CTTACTGTTTGGTTGCAATTGGTGGCTCTGAGAACTTCTACAGTGCCTTTGAGGCTGAATTGGGTGGTCTCATTCCAGTTGTTAAAGTATCCATTGATGGCACTCGCATT
ATTGGCCGCCTCTGTGCTGTGTTTTCAAGGCGCAAGGCGCACCTCAAGGCGACGAGCCTTGTTATCGCCTTAAGGCGAGAGGCGACAAAAAGGCGTCGCCTGAGTGAAGC
AGTGGCGGTGGTGGCAGTGAAGGATGAAGCAGTAGTGGCGAAGGAGGAAGGTTTTCGGAGTCGCCTTGCTTCTAAGAGGTGCTCGTCTCACCCTATGACAATGGCGCCAA
GGCGCAACAAGGCGCACAAAGGCGAGCGCCCGATTGAAGGCGCTCGCCTCGGCGCCGTTCAAGGCACGCCCAGGCCAAAACGCCTCGCCCCTCGCCTTAGGCGAGCGCCT
GGGCGCGCCTTGAAAACACTTGTTGTGCCATTTGGAAAGATTCCTTTCACAAGAAGATCAAATTATTTCTTTGGGAAACCAGCCTTCACGCATTAA

mRNA sequence

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Protein sequence

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MVIGQKFLNELSVKLREWLPRKWPPALNHVSISVGDVDGKHWWRPMIVLGILLASRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELGGLIPVVKVSIDGTRI
IGRLCAVFSRRKAHLKATSLVIALRREATKRRRLSEAVAVVAVKDEAVVAKEEGFRSRLASKRCSSHPMTMAPRRNKAHKGERPIEGARLGAVQGTPRPKRLAPRLRRAP
GRALKTLVVPFGKIPFTRRSNYFFGKPAFTH

Moc02g15530 (gene) of Bitter gourd (OHB3-1) v2 genome