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Moc02g16930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g16930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr2:12712415..12713595
RNA-Seq ExpressionMoc02g16930
SyntenyMoc02g16930
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150038.1 uncharacterized protein K02A2.6-like [Momordica charantia]3.3e-3454.61Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA +LL AP  + FEY +RF F   NNEAE EAL+AGLR+ + + A H+ + SDSQL+V+QI EEYQAKD RM+KYL KVR  L++F+ Y + +VPR+
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
         N+NAD LA+L S Y T L++SV VEIL+T  + E +   +DT +PTWMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]1.3e-3354.61Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA +LL APS + FEY +RF F   NNEAE EAL+A L +   + AVH+ + SDSQLVV+QI EEYQ KD RM+KYL KVR  L++F+ Y + +VPR+
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        EN+NAD LA+L S+Y T L++SV VEIL++  + E + M +DT +P+WMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

XP_022150862.1 uncharacterized protein LOC111018909 [Momordica charantia]1.1e-4043.3Show/hide
Query:  EKRPTVTNTIFAAITFTMKDYRGIHLPQNDVLVISSLIDNVRVKRVLID-GRASTNILPLSTY-------------------------------------
        E++PT       +ITF   D  G+HLP ND LVI+ LID++ V+RVL+D GR     L LS Y                                     
Subjt:  EKRPTVTNTIFAAITFTMKDYRGIHLPQNDVLVISSLIDNVRVKRVLID-GRASTNILPLSTY-------------------------------------

Query:  ------LALGSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQG
                 G GA +LL AP  + FEY +RF F   NN+A  EAL+AGLR+ + + A H+ + SDSQL+V+QI EEYQAKD RM+KYL KVR  L++F  
Subjt:  ------LALGSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQG

Query:  YTIERVPRAENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        Y + +VPR+EN+NADVLA+L S+Y T L++SV V IL+T  + E + M +DT++PTWMD I
Subjt:  YTIERVPRAENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

XP_022158589.1 uncharacterized protein LOC111025045 [Momordica charantia]3.3e-3453.29Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA++LL AP  + FEY +RF F   NNEAE EAL+AGLR+ + + A+H+ + +DSQLVV+QI EEYQ KD RM+KYL KVR  L++F+ Y + +VPR+
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        EN+NA  LA+L S+Y T L++SV VEIL+   + E + M +DT  P+WMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

XP_022158860.1 uncharacterized protein LOC111025322 [Momordica charantia]3.3e-3455.92Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA +LL AP  + FEY +RF F   NNEAE EAL+ GLR+  A+ A H+ + SDSQLVVSQI EEYQAKDSRM+KYL KVR  L +F+ Y + +VPRA
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        EN+NA+ LA+L  +Y T L++SV VEIL+   + E + M +DT  P+WMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

TrEMBL top hitse value%identityAlignment
A0A6J1D7J6 Ribonuclease H6.1e-3454.61Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA +LL APS + FEY +RF F   NNEAE EAL+A L +   + AVH+ + SDSQLVV+QI EEYQ KD RM+KYL KVR  L++F+ Y + +VPR+
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        EN+NAD LA+L S+Y T L++SV VEIL++  + E + M +DT +P+WMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

A0A6J1D8D8 Ribonuclease H1.6e-3454.61Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA +LL AP  + FEY +RF F   NNEAE EAL+AGLR+ + + A H+ + SDSQL+V+QI EEYQAKD RM+KYL KVR  L++F+ Y + +VPR+
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
         N+NAD LA+L S Y T L++SV VEIL+T  + E +   +DT +PTWMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

A0A6J1DBX4 Ribonuclease H5.1e-4143.3Show/hide
Query:  EKRPTVTNTIFAAITFTMKDYRGIHLPQNDVLVISSLIDNVRVKRVLID-GRASTNILPLSTY-------------------------------------
        E++PT       +ITF   D  G+HLP ND LVI+ LID++ V+RVL+D GR     L LS Y                                     
Subjt:  EKRPTVTNTIFAAITFTMKDYRGIHLPQNDVLVISSLIDNVRVKRVLID-GRASTNILPLSTY-------------------------------------

Query:  ------LALGSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQG
                 G GA +LL AP  + FEY +RF F   NN+A  EAL+AGLR+ + + A H+ + SDSQL+V+QI EEYQAKD RM+KYL KVR  L++F  
Subjt:  ------LALGSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQG

Query:  YTIERVPRAENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        Y + +VPR+EN+NADVLA+L S+Y T L++SV V IL+T  + E + M +DT++PTWMD I
Subjt:  YTIERVPRAENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

A0A6J1DX12 uncharacterized protein LOC1110253221.6e-3455.92Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA +LL AP  + FEY +RF F   NNEAE EAL+ GLR+  A+ A H+ + SDSQLVVSQI EEYQAKDSRM+KYL KVR  L +F+ Y + +VPRA
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        EN+NA+ LA+L  +Y T L++SV VEIL+   + E + M +DT  P+WMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

A0A6J1DZV0 uncharacterized protein LOC1110250451.6e-3453.29Show/hide
Query:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA
        G GA++LL AP  + FEY +RF F   NNEAE EAL+AGLR+ + + A+H+ + +DSQLVV+QI EEYQ KD RM+KYL KVR  L++F+ Y + +VPR+
Subjt:  GSGARVLLQAPSRDLFEYVVRF-FPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRA

Query:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI
        EN+NA  LA+L S+Y T L++SV VEIL+   + E + M +DT  P+WMD I
Subjt:  ENANADVLARLTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI

SwissProt top hitse value%identityAlignment
Q9HSF6 Ribonuclease HI1.2e-0738.1Show/hide
Query:  ALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRAENANADVLA
        A NN+AE +AL+A L          +++R DSQLV  Q+T  +   D  +++   + R+LL+ F  ++I  VPRA N  AD LA
Subjt:  ALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRAENANADVLA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGGGAAAAGGGAGACCTGTTCCTCTCACGGAAAGATAAAATATGATCGATCTGACAGAGATGATAGAGATGAGTCACGTTCATCGAAGAAGATAGAACCT
AACGAAAAAAGACCTACAGTTACAAACACCATCTTTGCTGCCATAACCTTCACCATGAAGGATTATAGAGGGATCCATTTGCCACAAAACGACGTTCTGGTTATT
TCCTCACTGATTGATAATGTACGCGTCAAGAGGGTTTTGATTGACGGAAGAGCCTCTACCAATATACTGCCTCTTTCAACCTATTTAGCTTTAGGTAGTGGGGCC
AGAGTCCTCCTTCAGGCGCCCAGCAGAGATCTGTTTGAATACGTAGTAAGATTCTTTCCAGCCTTGAACAATGAGGCCGAGTCTGAAGCACTGGTGGCAGGCTTA
CGTATGATTGAGGCCATGAGAGCCGTGCACTTGGACATAAGAAGCGACTCGCAGCTCGTGGTCAGCCAGATTACCGAGGAATACCAAGCCAAGGATAGCAGGATG
AAGAAGTACTTATACAAGGTGCGCAAGTTGTTGTCTAGGTTCCAGGGGTACACTATAGAGCGAGTACCGCGTGCGGAAAACGCCAATGCAGATGTCTTGGCAAGG
CTGACATCCTCTTACTCGACCAAGCTGTCCAAGTCGGTCCAAGTCGAAATTTTAGAGACTATTTTTGTCCACGAGCTGGAAGCAATGAACATCGACACCACGACT
CCGACCTGGATGGATCACATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGGGAAAAGGGAGACCTGTTCCTCTCACGGAAAGATAAAATATGATCGATCTGACAGAGATGATAGAGATGAGTCACGTTCATCGAAGAAGATAGAACCT
AACGAAAAAAGACCTACAGTTACAAACACCATCTTTGCTGCCATAACCTTCACCATGAAGGATTATAGAGGGATCCATTTGCCACAAAACGACGTTCTGGTTATT
TCCTCACTGATTGATAATGTACGCGTCAAGAGGGTTTTGATTGACGGAAGAGCCTCTACCAATATACTGCCTCTTTCAACCTATTTAGCTTTAGGTAGTGGGGCC
AGAGTCCTCCTTCAGGCGCCCAGCAGAGATCTGTTTGAATACGTAGTAAGATTCTTTCCAGCCTTGAACAATGAGGCCGAGTCTGAAGCACTGGTGGCAGGCTTA
CGTATGATTGAGGCCATGAGAGCCGTGCACTTGGACATAAGAAGCGACTCGCAGCTCGTGGTCAGCCAGATTACCGAGGAATACCAAGCCAAGGATAGCAGGATG
AAGAAGTACTTATACAAGGTGCGCAAGTTGTTGTCTAGGTTCCAGGGGTACACTATAGAGCGAGTACCGCGTGCGGAAAACGCCAATGCAGATGTCTTGGCAAGG
CTGACATCCTCTTACTCGACCAAGCTGTCCAAGTCGGTCCAAGTCGAAATTTTAGAGACTATTTTTGTCCACGAGCTGGAAGCAATGAACATCGACACCACGACT
CCGACCTGGATGGATCACATCTAA
Protein sequenceShow/hide protein sequence
MWGKRETCSSHGKIKYDRSDRDDRDESRSSKKIEPNEKRPTVTNTIFAAITFTMKDYRGIHLPQNDVLVISSLIDNVRVKRVLIDGRASTNILPLSTYLALGSGA
RVLLQAPSRDLFEYVVRFFPALNNEAESEALVAGLRMIEAMRAVHLDIRSDSQLVVSQITEEYQAKDSRMKKYLYKVRKLLSRFQGYTIERVPRAENANADVLAR
LTSSYSTKLSKSVQVEILETIFVHELEAMNIDTTTPTWMDHI