CuGenDBv2

Gene ID	Moc02g17060
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr2:12808384..12810751
RNA-Seq Expression	Moc02g17060
Synteny	Moc02g17060
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0049700.1 T4.5 [Cucumis melo var. makuwa]

3.7e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]

3.7e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]

3.7e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]

3.7e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

XP_022159298.1 uncharacterized protein LOC111025709 [Momordica charantia]

2.3e-44

61.29

Show/hide

Query:  KPYAILASSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYI-KC
        KP   L SSS ++ S     NPA  DWIAKDHA MTL+NATLSP+AL+Y+VGC+S +++W  LVK+YSS+SRTN+V LK+ L+SI+KKP ESI  Y+ + 
Subjt:  KPYAILASSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYI-KC

Query:  KKFKDKLANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFV
        K+ KDKLAN+SV +D+EDL+IYTLNGLP E+N F TSM TR+  + FEELYVL V
Subjt:  KKFKDKLANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI58 uncharacterized protein LOC103490319 isoform X2

1.8e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X3

1.8e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X1

1.8e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

A0A5D3CLI6 T4.5

1.8e-42

60.39

Show/hide

Query:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL
        ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K YSS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKL
Subjt:  SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKL

Query:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL
        AN+S  I++EDL+IY LNGLP EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Subjt:  ANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL

A0A6J1DYF1 uncharacterized protein LOC111025709

1.1e-44

61.29

Show/hide

Query:  KPYAILASSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYI-KC
        KP   L SSS ++ S     NPA  DWIAKDHA MTL+NATLSP+AL+Y+VGC+S +++W  LVK+YSS+SRTN+V LK+ L+SI+KKP ESI  Y+ + 
Subjt:  KPYAILASSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYI-KC

Query:  KKFKDKLANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFV
        K+ KDKLAN+SV +D+EDL+IYTLNGLP E+N F TSM TR+  + FEELYVL V
Subjt:  KKFKDKLANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFV

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-05

26.19

Show/hide

Query:  EDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESI-AKKPTESIHQYIKCKKFKDKLANISVTIDDEDLVIYTL
        EDW   D    + I   LS   ++ ++  ++ + IW  L   Y S + TN + LK  L ++   + T  +           +LAN+ V I++ED  I  L
Subjt:  EDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESI-AKKPTESIHQYIKCKKFKDKLANISVTIDDEDLVIYTL

Query:  NGLPAEYNTFRTSMHTRASPIQFEEL
        N LP+ Y+   T++    + I+ +++
Subjt:  NGLPAEYNTFRTSMHTRASPIQFEEL

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

6.0e-06

25.37

Show/hide

Query:  VGSAVVQSNPADEDWIAKDHAFMTLINATLSPTAL--SYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIKCKKFKDKLANIS
        +   ++ +N  D +W  +D      +  TL+P     S+V    S ++IW  +   + +N     + L + L +           Y K KK  D L N+ 
Subjt:  VGSAVVQSNPADEDWIAKDHAFMTLINATLSPTAL--SYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIKCKKFKDKLANIS

Query:  VTIDDEDLVIYTLNGLPAEY-NTFRTSMHTRASP
        V + D +LV+Y LNGL  ++ N      H +  P
Subjt:  VTIDDEDLVIYTLNGLPAEY-NTFRTSMHTRASP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGCGGAAAGGCAAGTTCGAGGCATGCAAGAGATTGGCAGCGGAGCTTCTCGACACAACGTGACCTCAACGGGGGCAGTATTGATCAATCGGTCAAGAAGGAGCATTT
CCCGAGCAGGTTTCAAGTCGAAGTGGAGAACTTGGCATTACTCAAACGCCCTGGCCGTAAGAGACAGCCCCCACACAAGTGCGACCGGATTCGGTACCTTTGCTTCCACA
AGAATCATAGCCACAACACCACGGATTGCAACAACTTAAAGCAACAAGTCCAATCCCTTAGATATGTAGTTAAGCCCTATGCAATTTTGGCGTCTTCTTCGCCAACAGTT
GGATCTGCAGTCGTCCAATCCAATCCAGCCGATGAAGATTGGATCGCCAAGGATCATGCTTTCATGACCTTGATTAATGCTACTCTATCACCAACCGCTCTTTCTTATGT
TGTTGGCTGTGAATCCTTAAAGGAAATTTGGGACATACTTGTCAAACATTATTCTTCGAATTCAAGGACGAATATTGTGACGCTTAAAACTTATTTGGAATCAATTGCTA
AGAAGCCTACTGAATCAATCCATCAGTATATTAAATGTAAAAAATTCAAGGACAAGTTGGCTAACATATCTGTCACAATTGATGATGAAGATCTGGTTATCTACACATTA
AATGGTTTGCCTGCTGAGTACAACACTTTTCGGACTTCTATGCACACCCGCGCTTCTCCGATTCAGTTTGAAGAACTTTATGTTCTTTTTGTTGCGAGGAATTTGTCATT
GATAAACAAGCTAGGAGCGATGAATCCTTCTCTTCACCTACTTCACTTCTTACCTCACGAAATTATTCTTGGAATCAAAATGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGGKASSRHARDWQRSFSTQRDLNGGSIDQSVKKEHFPSRFQVEVENLALLKRPGRKRQPPHKCDRIRYLCFHKNHSHNTTDCNNLKQQVQSLRYVVKPYAILASSSPTV
GSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIKCKKFKDKLANISVTIDDEDLVIYTL
NGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSLINKLGAMNPSLHLLHFLPHEIILGIKM

Moc02g17060 (gene) of Bitter gourd (OHB3-1) v2 genome