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Moc02g17280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g17280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr2:12949335..12954766
RNA-Seq ExpressionMoc02g17280
SyntenyMoc02g17280
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]1.7e-2969.7Show/hide
Query:  RGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
        R ++D++     K+KFDAQ+EALKA+CEKKE+  DDG++GESPF SDILEA IP  FKT  MKPYDGSKDPKDYVEVFEGLMD QA  + IKCR FQIA
Subjt:  RGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]3.7e-2950.97Show/hide
Query:  LQRELYDMRNRGG---GDDLQYEGDDQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPF
        L++ L D + +      D L Y  +  N        NL  + + + L+    IN  R ++D +     K++FD Q+EALKARCEKKE+  DD ++GESPF
Subjt:  LQRELYDMRNRGG---GDDLQYEGDDQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPF

Query:  ISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
         SDI+EAPIP  FKT  MKPYDGSKDPKDYVEVFEGLMD QA  + IKC AFQIA
Subjt:  ISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

XP_022156088.1 uncharacterized protein LOC111023060 [Momordica charantia]1.3e-2977.01Show/hide
Query:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
        K+KFDAQ+EALK RCEKKE+  DDG++GESPF SDILEA IP  FKT  MK YDGSKDPKDYVEVFEGLMD QA  + IKCRAFQIA
Subjt:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

XP_022159250.1 uncharacterized protein LOC111025663 [Momordica charantia]1.1e-3079.31Show/hide
Query:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
        K+KFD Q+EALKARCEKKE   DDG++GESPF SDILEAPIP  FKT  MKPYDGSKDPKDYVEVFEGLMD QA  + IKCRAFQIA
Subjt:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

XP_022159327.1 uncharacterized protein LOC111025738 [Momordica charantia]4.2e-3339.85Show/hide
Query:  SGTHCCLNGNNSLPREVDVKAIDDHRQGDRVGDQP-RRSARNANMALPYTHLWPPKTHRGRGGASKRTSRRSVPATDPDVLATLQRELYDMRNR------
        +G    L  N+   REV  + ++     + +G +P  RSAR     L   H  P K +RGRGGAS+RT+  + PA   +    LQ+E+  MR +      
Subjt:  SGTHCCLNGNNSLPREVDVKAIDDHRQGDRVGDQP-RRSARNANMALPYTHLWPPKTHRGRGGASKRTSRRSVPATDPDVLATLQRELYDMRNR------

Query:  ---------GGGDDLQ------YEGD---------------DQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCE
                 G G   +        GD                ++P     + N   E     +V    I   R ++D++     K+KFDAQ+E LKARCE
Subjt:  ---------GGGDDLQ------YEGD---------------DQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCE

Query:  KKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
         K +  DDG++GESPF SDILEA IPS FKT  MKPYDGSKDPKDYVEVFEGLM  QA  + IK RAFQIA
Subjt:  KKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

TrEMBL top hitse value%identityAlignment
A0A6J1DDW5 uncharacterized protein LOC1110196348.0e-3069.7Show/hide
Query:  RGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
        R ++D++     K+KFDAQ+EALKA+CEKKE+  DDG++GESPF SDILEA IP  FKT  MKPYDGSKDPKDYVEVFEGLMD QA  + IKCR FQIA
Subjt:  RGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

A0A6J1DPC9 uncharacterized protein LOC1110222801.8e-2950.97Show/hide
Query:  LQRELYDMRNRGG---GDDLQYEGDDQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPF
        L++ L D + +      D L Y  +  N        NL  + + + L+    IN  R ++D +     K++FD Q+EALKARCEKKE+  DD ++GESPF
Subjt:  LQRELYDMRNRGG---GDDLQYEGDDQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPF

Query:  ISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
         SDI+EAPIP  FKT  MKPYDGSKDPKDYVEVFEGLMD QA  + IKC AFQIA
Subjt:  ISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

A0A6J1DPN4 uncharacterized protein LOC1110230606.1e-3077.01Show/hide
Query:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
        K+KFDAQ+EALK RCEKKE+  DDG++GESPF SDILEA IP  FKT  MK YDGSKDPKDYVEVFEGLMD QA  + IKCRAFQIA
Subjt:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

A0A6J1DY58 uncharacterized protein LOC1110256635.5e-3179.31Show/hide
Query:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
        K+KFD Q+EALKARCEKKE   DDG++GESPF SDILEAPIP  FKT  MKPYDGSKDPKDYVEVFEGLMD QA  + IKCRAFQIA
Subjt:  KNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

A0A6J1DZJ1 uncharacterized protein LOC1110257382.0e-3339.85Show/hide
Query:  SGTHCCLNGNNSLPREVDVKAIDDHRQGDRVGDQP-RRSARNANMALPYTHLWPPKTHRGRGGASKRTSRRSVPATDPDVLATLQRELYDMRNR------
        +G    L  N+   REV  + ++     + +G +P  RSAR     L   H  P K +RGRGGAS+RT+  + PA   +    LQ+E+  MR +      
Subjt:  SGTHCCLNGNNSLPREVDVKAIDDHRQGDRVGDQP-RRSARNANMALPYTHLWPPKTHRGRGGASKRTSRRSVPATDPDVLATLQRELYDMRNR------

Query:  ---------GGGDDLQ------YEGD---------------DQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCE
                 G G   +        GD                ++P     + N   E     +V    I   R ++D++     K+KFDAQ+E LKARCE
Subjt:  ---------GGGDDLQ------YEGD---------------DQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCE

Query:  KKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA
         K +  DDG++GESPF SDILEA IPS FKT  MKPYDGSKDPKDYVEVFEGLM  QA  + IK RAFQIA
Subjt:  KKENVLDDGEMGESPFISDILEAPIPSMFKTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCCAGGTCCGCCCAAGTGTTCAGGTCGGTCCGGAGGCCGAGTTCGAGCTACAATCGGGAACACACTGTTGTCTGAATGG
CAACAATAGCCTCCCACGCGAGGTTGATGTTAAGGCTATAGACGATCACCGCCAGGGAGACCGAGTGGGCGACCAACCACGCAGGTCGGCTCGCAATGCCAACATGGCTT
TGCCGTATACTCATCTGTGGCCCCCCAAGACCCACCGAGGTCGAGGTGGAGCATCGAAAAGAACTTCACGCAGGTCCGTACCAGCGACGGATCCTGATGTTCTAGCTACA
TTGCAACGGGAGCTTTATGACATGCGTAATCGAGGCGGCGGAGACGACCTGCAGTATGAAGGGGATGATCAAAATCCTCCTCTCCATCGTGACGATGATAACCTGCACGT
TGAACTCCAACTTCAAAGCCTAGTCTCGTTACAATCCATTAACACCCTAAGGGGTGATTACGATAGAATAGTTCGACCTGATGAAAAAAACAAGTTCGATGCACAGATTG
AGGCTTTAAAGGCACGATGCGAAAAGAAAGAAAATGTGCTTGATGACGGCGAAATGGGTGAGTCGCCGTTTATCTCGGACATCCTGGAGGCGCCCATCCCTTCCATGTTC
AAGACGTCCGCCATGAAACCTTATGATGGGTCGAAGGACCCGAAGGACTATGTCGAGGTCTTTGAGGGCCTCATGGATTTACAGGCACCTTTGAACGTCATCAAGTGCCG
AGCATTTCAGATAGCCCATAACTGGGAGTGCTCGACTCTGGTACAGAAGGCTACCAGCCAGGTCGATCTCGACTTACTGTCAGCTGAGGAAGGAATTTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCCAGGTCCGCCCAAGTGTTCAGGTCGGTCCGGAGGCCGAGTTCGAGCTACAATCGGGAACACACTGTTGTCTGAATGG
CAACAATAGCCTCCCACGCGAGGTTGATGTTAAGGCTATAGACGATCACCGCCAGGGAGACCGAGTGGGCGACCAACCACGCAGGTCGGCTCGCAATGCCAACATGGCTT
TGCCGTATACTCATCTGTGGCCCCCCAAGACCCACCGAGGTCGAGGTGGAGCATCGAAAAGAACTTCACGCAGGTCCGTACCAGCGACGGATCCTGATGTTCTAGCTACA
TTGCAACGGGAGCTTTATGACATGCGTAATCGAGGCGGCGGAGACGACCTGCAGTATGAAGGGGATGATCAAAATCCTCCTCTCCATCGTGACGATGATAACCTGCACGT
TGAACTCCAACTTCAAAGCCTAGTCTCGTTACAATCCATTAACACCCTAAGGGGTGATTACGATAGAATAGTTCGACCTGATGAAAAAAACAAGTTCGATGCACAGATTG
AGGCTTTAAAGGCACGATGCGAAAAGAAAGAAAATGTGCTTGATGACGGCGAAATGGGTGAGTCGCCGTTTATCTCGGACATCCTGGAGGCGCCCATCCCTTCCATGTTC
AAGACGTCCGCCATGAAACCTTATGATGGGTCGAAGGACCCGAAGGACTATGTCGAGGTCTTTGAGGGCCTCATGGATTTACAGGCACCTTTGAACGTCATCAAGTGCCG
AGCATTTCAGATAGCCCATAACTGGGAGTGCTCGACTCTGGTACAGAAGGCTACCAGCCAGGTCGATCTCGACTTACTGTCAGCTGAGGAAGGAATTTATTAA
Protein sequenceShow/hide protein sequence
MLSMRAEVNLAQVRPSVQVGPEAEFELQSGTHCCLNGNNSLPREVDVKAIDDHRQGDRVGDQPRRSARNANMALPYTHLWPPKTHRGRGGASKRTSRRSVPATDPDVLAT
LQRELYDMRNRGGGDDLQYEGDDQNPPLHRDDDNLHVELQLQSLVSLQSINTLRGDYDRIVRPDEKNKFDAQIEALKARCEKKENVLDDGEMGESPFISDILEAPIPSMF
KTSAMKPYDGSKDPKDYVEVFEGLMDLQAPLNVIKCRAFQIAHNWECSTLVQKATSQVDLDLLSAEEGIY