CuGenDBv2

Gene ID	Moc02g17410
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty1-copia retrotransposon protein
Genome location	chr2:13013908..13017699
RNA-Seq Expression	Moc02g17410
Synteny	Moc02g17410
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048277.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

7.3e-90

52.93

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LDG+NY  WS KLLIFFEQLEVDYVLTT + T    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL-----PRKESQRRK
        LLNHM+D +FDLF  +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK I++Q+HEY+NLVANVLS+GMKMC  ++ N L     P     R K
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL-----PRKESQRRK

Query:  VLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLS
              ++ +  +K  PQ N+AE D+ I   + EANL+ENK+ W+LDTGASRHFC NR L H++   A+GECV MGNSAT GV+GK K++LKL SDKTLS
Subjt:  VLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLS

Query:  LSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES
        LS+VLYV SLRRN VSGSLLNR+GL      L   ++V+           L  G++++  +S N   +SS  +IES
Subjt:  LSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES

KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.6e-81

48.36

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LDG+NY  WS KLLIFFEQLEVDYVLTT + +    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL----PRKESQRRKV
        LLNHM+D +FDLFV +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK +++Q+HEY+NLVANVLS+ MKMC  ++ N L    P   +  R  
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL----PRKESQRRKV

Query:  LPVQPKEMK----------------------AIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSA
        L  + K++K                        +K  PQ N+ E D+ I   + EANL+ENK+ W+LDT AS HFC N  L H++   A+GECV MGNS 
Subjt:  LPVQPKEMK----------------------AIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSA

Query:  TPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES
        T GV+GK K++LKL S KTLSLS+VLYV SLRRN VS SLLNR GL      L   ++V+           L  G++++  +S N   +SS  +IES
Subjt:  TPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.2e-79

44.11

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LDG+NY  WS KLLIFFEQLEVDYVLTT + T    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCS---------------------
        LLNHM+D +FDLFV +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK +M+Q+HEY+NLVANVLS+GMKMC                      
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCS---------------------

Query:  -KVKK-----------------NRLPRK-----------------------------------ESQRRKVLPVQPKEMKAI-------------------
         K KK                 NRL  K                                   E ++ K    Q K+ K +                   
Subjt:  -KVKK-----------------NRLPRK-----------------------------------ESQRRKVLPVQPKEMKAI-------------------

Query:  ---KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSS
           +K  PQ N+AE D+ I   + EANL+ENK+ W+LDTGASRHFC NR L H++   A+GECV MGNSAT GV+GK K++LKL S KTLSLS+VLYV S
Subjt:  ---KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSS

Query:  LRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES
        LRRN VSGSLLNR GL      L   ++V+           L  G++++  +S N   +SS  +IES
Subjt:  LRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES

TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

4.9e-86

49.75

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LD +NY  WS KLLIFFEQLEVDYVLTT + T    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPR---------KES
        LLNHM+D +FDLFV +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK +++Q+HEY+NLVANVLS+GMKMC  ++ N + R         K S
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPR---------KES

Query:  QRR--KVLPVQPKEMKAI----------------------KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGEC
        ++R  K    Q K+ K +                      +K  PQ N+AE D+ I   + EANL+ENK+ W+LDTGASRHFC NR L H++   A+GEC
Subjt:  QRR--KVLPVQPKEMKAI----------------------KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGEC

Query:  VCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGT
        V MGNSAT GV+GK K++LKL S KTLSLS+VLYV SLRRN VSGSLLNR GL      L   ++V+           L  G++++  +S N   +SS  
Subjt:  VCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGT

Query:  MIES
        +IES
Subjt:  MIES

XP_022150382.1 uncharacterized protein LOC111018559 [Momordica charantia]

1.1e-90

55.87

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTTVATDVVATVVTIAG-----VAGNVVG---AVTEAAVGATTTTAAAAIANKFEKD
        MASVRS KVLPD SKLESLDGSNYH WS KL IFFEQLEVDYVLTT A DV A    +AG     VAG V G   AV  A  GATTTTA AA A+KF+KD
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTTVATDVVATVVTIAG-----VAGNVVG---AVTEAAVGATTTTAAAAIANKFEKD

Query:  NKTIRGHLLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPRK----
        NKTI  HLLNHMN+SLFD FV K  AKI+WDTLESR+GGDD  R KYVVGKWLQFQMADDK IMDQVHEYKNLVANVLS+GMKMC  ++ N L  K    
Subjt:  NKTIRGHLLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPRK----

Query:  -----------------------------------------------------------ESQRRKVLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEA
                                                                   + + ++V   + ++ K  +  +P G I ++ +I+     EA
Subjt:  -----------------------------------------------------------ESQRRKVLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEA

Query:  NLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGS
        NLVENKS WVLDT A RHFC NRN FHEF+   +GE V MGNSAT  VLGK KILLKL  DKTLSLSDVLYV SLRRN +SGS
Subjt:  NLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U214 Ty1-copia retrotransposon protein

3.5e-90

52.93

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LDG+NY  WS KLLIFFEQLEVDYVLTT + T    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL-----PRKESQRRK
        LLNHM+D +FDLF  +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK I++Q+HEY+NLVANVLS+GMKMC  ++ N L     P     R K
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL-----PRKESQRRK

Query:  VLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLS
              ++ +  +K  PQ N+AE D+ I   + EANL+ENK+ W+LDTGASRHFC NR L H++   A+GECV MGNSAT GV+GK K++LKL SDKTLS
Subjt:  VLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLS

Query:  LSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES
        LS+VLYV SLRRN VSGSLLNR+GL      L   ++V+           L  G++++  +S N   +SS  +IES
Subjt:  LSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES

A0A5A7UFB4 Ty1-copia retrotransposon protein

7.9e-82

48.36

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LDG+NY  WS KLLIFFEQLEVDYVLTT + +    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL----PRKESQRRKV
        LLNHM+D +FDLFV +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK +++Q+HEY+NLVANVLS+ MKMC  ++ N L    P   +  R  
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRL----PRKESQRRKV

Query:  LPVQPKEMK----------------------AIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSA
        L  + K++K                        +K  PQ N+ E D+ I   + EANL+ENK+ W+LDT AS HFC N  L H++   A+GECV MGNS 
Subjt:  LPVQPKEMK----------------------AIKKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSA

Query:  TPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES
        T GV+GK K++LKL S KTLSLS+VLYV SLRRN VS SLLNR GL      L   ++V+           L  G++++  +S N   +SS  +IES
Subjt:  TPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES

A0A5D3BZI1 Ty1-copia retrotransposon protein

5.7e-80

44.11

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LDG+NY  WS KLLIFFEQLEVDYVLTT + T    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCS---------------------
        LLNHM+D +FDLFV +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK +M+Q+HEY+NLVANVLS+GMKMC                      
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCS---------------------

Query:  -KVKK-----------------NRLPRK-----------------------------------ESQRRKVLPVQPKEMKAI-------------------
         K KK                 NRL  K                                   E ++ K    Q K+ K +                   
Subjt:  -KVKK-----------------NRLPRK-----------------------------------ESQRRKVLPVQPKEMKAI-------------------

Query:  ---KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSS
           +K  PQ N+AE D+ I   + EANL+ENK+ W+LDTGASRHFC NR L H++   A+GECV MGNSAT GV+GK K++LKL S KTLSLS+VLYV S
Subjt:  ---KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSS

Query:  LRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES
        LRRN VSGSLLNR GL      L   ++V+           L  G++++  +S N   +SS  +IES
Subjt:  LRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGTMIES

A0A5D3CM58 Ty1-copia retrotransposon protein

2.4e-86

49.75

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH
        M+   S+K+LPDLSKLE LD +NY  WS KLLIFFEQLEVDYVLTT + T    T  + +    +  G +T  AV             K+ KDNKT+RGH
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTT-VATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGH

Query:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPR---------KES
        LLNHM+D +FDLFV +  AK IW TLESR+GGDD  R KYVVGKWLQFQM DDK +++Q+HEY+NLVANVLS+GMKMC  ++ N + R         K S
Subjt:  LLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPR---------KES

Query:  QRR--KVLPVQPKEMKAI----------------------KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGEC
        ++R  K    Q K+ K +                      +K  PQ N+AE D+ I   + EANL+ENK+ W+LDTGASRHFC NR L H++   A+GEC
Subjt:  QRR--KVLPVQPKEMKAI----------------------KKHAPQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGEC

Query:  VCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGT
        V MGNSAT GV+GK K++LKL S KTLSLS+VLYV SLRRN VSGSLLNR GL      L   ++V+           L  G++++  +S N   +SS  
Subjt:  VCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLNRVGLFFRPTRLSSQRMVI----------LLVRGIWLMAYLSFN-TMTSSGT

Query:  MIES
        +IES
Subjt:  MIES

A0A6J1DAK7 uncharacterized protein LOC111018559

5.5e-91

55.87

Show/hide

Query:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTTVATDVVATVVTIAG-----VAGNVVG---AVTEAAVGATTTTAAAAIANKFEKD
        MASVRS KVLPD SKLESLDGSNYH WS KL IFFEQLEVDYVLTT A DV A    +AG     VAG V G   AV  A  GATTTTA AA A+KF+KD
Subjt:  MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTTVATDVVATVVTIAG-----VAGNVVG---AVTEAAVGATTTTAAAAIANKFEKD

Query:  NKTIRGHLLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPRK----
        NKTI  HLLNHMN+SLFD FV K  AKI+WDTLESR+GGDD  R KYVVGKWLQFQMADDK IMDQVHEYKNLVANVLS+GMKMC  ++ N L  K    
Subjt:  NKTIRGHLLNHMNDSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPRK----

Query:  -----------------------------------------------------------ESQRRKVLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEA
                                                                   + + ++V   + ++ K  +  +P G I ++ +I+     EA
Subjt:  -----------------------------------------------------------ESQRRKVLPVQPKEMKAIKKHAPQGNIAEMDNIITTVVEEA

Query:  NLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGS
        NLVENKS WVLDT A RHFC NRN FHEF+   +GE V MGNSAT  VLGK KILLKL  DKTLSLSDVLYV SLRRN +SGS
Subjt:  NLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGS

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.1e-06

37.86

Show/hide

Query:  DNIITTVVEE---ANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLN
        DN++  + EE    +L   +S WV+DT AS H    R+LF   YV  +   V MGN++   + G   I +K     TL L DV +V  LR N +SG  L+
Subjt:  DNIITTVVEE---ANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLN

Query:  RVG
        R G
Subjt:  RVG

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

2.3e-09

24.22

Show/hide

Query:  KLESLDGSNYHHWSLKLLIFFEQLEVDYVLTTVATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGHLLNHMNDSLFDLFVA
        K+   DG +Y +W+ ++ +F +QL++ YVL+                    +G+           T A A   K+ +D+     HL+N ++D L+  +  
Subjt:  KLESLDGSNYHHWSLKLLIFFEQLEVDYVLTTVATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGHLLNHMNDSLFDLFVA

Query:  K-TFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGM
        K   AK +WD L+  +  D+ +  +  V K+++F+M +++ I++QV  +  +  +++S GM
Subjt:  K-TFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCAGTAAGATCCGACAAGGTACTTCCAGATCTGTCCAAACTCGAATCATTGGATGGATCTAATTACCATCACTGGTCTCTAAAGCTACTCATCTTCTTC
GAGCAATTGGAGGTAGACTATGTCCTGACCACCGTAGCCACCGATGTCGTTGCCACCGTCGTAACTATAGCTGGAGTCGCCGGAAATGTTGTCGGAGCTGTCACC
GAAGCTGCCGTCGGAGCCACTACCACCACCGCCGCTGCCGCTATCGCCAATAAATTCGAGAAGGATAACAAGACTATCCGTGGGCATCTCCTCAACCATATGAAT
GACTCGCTATTTGATCTTTTTGTTGCTAAAACATTTGCAAAGATTATTTGGGACACTCTGGAGTCAAGACATGGTGGAGATGATGATGAGAGAAATAAGTATGTG
GTTGGCAAATGGCTGCAGTTTCAAATGGCAGATGACAAATTAATTATGGATCAAGTTCACGAGTACAAGAATTTGGTGGCTAATGTTTTATCCAAGGGCATGAAG
ATGTGTTCAAAAGTAAAGAAAAACAGGTTGCCGAGGAAAGAGTCTCAAAGAAGAAAGGTCCTACCAGTGCAACCAAAGGAAATGAAAGCCATAAAAAAGCATGCT
CCACAAGGCAACATTGCTGAGATGGACAACATCATTACTACTGTAGTTGAGGAAGCAAACTTAGTTGAAAACAAGTCCGGTTGGGTTCTAGACACTGGAGCTTCC
CGACACTTCTGCTTAAACCGAAACCTCTTTCACGAGTTTTATGTTTTCGCTAACGGTGAATGTGTTTGCATGGGTAACTCAGCTACGCCTGGAGTCCTCGGAAAA
GTGAAGATTCTTCTAAAACTTAGATCTGACAAAACTTTATCTTTAAGTGATGTTTTATATGTTTCTTCTCTACGTAGGAACTTCGTATCTGGAAGTTTACTGAAC
AGGGTGGGATTGTTTTTTAGGCCGACAAGGTTATCATCACAAAGAATGGTGATTTTGTTGGTAAGGGGTATCTGGTTGATGGCTTATTTGTCTTTTAACACTATG
ACATCTTCTGGTACAATGATTGAAAGTTTTTTACAGCAAATTCTGTGGGAGCCACGTGGCGTCTGGACGAGCAGTCCGGCGGTGGATCCACTGGACTTGAACCAA
GGAACTCGACACTTGGCCGTCAAGAAGGACGACCATTTGAGGTGGCAGGGACGTCGCGCACTGTACGGTTGGACAGAGAGGGGCACATTCCCGACAGTGCAGGGT
AGTCTCGCTACCTGGGTCGCTTGGATATGTCGTCCAGGGCCGTTGGATGCGCCCCTCGTGCTGAGAACACGCGCTGCCAGCTGTGGCCATGTAAGAGGCGTAACC
GTTCGTGGTACTTTGTCCCGTTGTGAGCAGATACGTCTTCTACTCGAGGCTAGGAGAACCTACAATTATATGTCTATGTGTGATTACAATCCTAGGGAATATTTA
TCAACTTATTCGCTTTATAAGTCAGAGGGCAGTTCCTCTTTCCCTTTTCGCCCAAGCGTTCTTGATTTTTACCGACGTGGCTCCAGCTCAACTTGCTCCCAACGC
ATGTGGCGCTCTGATGGTGCTGTCCAACCTGTGACCATAACTGGGAGGGGGCGAGGCGATGACCCTCTCACTGCTATCTACTATAACTATGATGAAGTCGATAAG
AGGCTTCTCTGGGTTCTTTAG

mRNA sequence

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Protein sequence

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MASVRSDKVLPDLSKLESLDGSNYHHWSLKLLIFFEQLEVDYVLTTVATDVVATVVTIAGVAGNVVGAVTEAAVGATTTTAAAAIANKFEKDNKTIRGHLLNHMN
DSLFDLFVAKTFAKIIWDTLESRHGGDDDERNKYVVGKWLQFQMADDKLIMDQVHEYKNLVANVLSKGMKMCSKVKKNRLPRKESQRRKVLPVQPKEMKAIKKHA
PQGNIAEMDNIITTVVEEANLVENKSGWVLDTGASRHFCLNRNLFHEFYVFANGECVCMGNSATPGVLGKVKILLKLRSDKTLSLSDVLYVSSLRRNFVSGSLLN
RVGLFFRPTRLSSQRMVILLVRGIWLMAYLSFNTMTSSGTMIESFLQQILWEPRGVWTSSPAVDPLDLNQGTRHLAVKKDDHLRWQGRRALYGWTERGTFPTVQG
SLATWVAWICRPGPLDAPLVLRTRAASCGHVRGVTVRGTLSRCEQIRLLLEARRTYNYMSMCDYNPREYLSTYSLYKSEGSSSFPFRPSVLDFYRRGSSSTCSQR
MWRSDGAVQPVTITGRGRGDDPLTAIYYNYDEVDKRLLWVL

Moc02g17410 (gene) of Bitter gourd (OHB3-1) v2 genome